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ASM609437v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:14990
Infraspecific name:
Strain: ATCC 14990
BioSample:
SAMN10738425
BioProject:
PRJNA515334
Submitter:
Zhejiang Tianke High Technology Development Co.Ltd.
Date:
2019/06/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006094375.1 (latest)
RefSeq assembly accession:
GCF_006094375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.5
Expected final version:
yes
Genome coverage:
240.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 3320831 [UID] 10959768 [GenBank] 11020258 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4853 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_006094375.1-RS_2024_04_23
Annotation Date::04/23/2024 01:42:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,368
CDSs (total)::2,284
Genes (coding)::2,231
CDSs (with protein)::2,231
Genes (RNA)::84
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::34 of 53
Pseudo Genes (incomplete)::31 of 53
Pseudo Genes (internal stop)::24 of 53
Pseudo Genes (multiple problems)::28 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,491,058
Total ungapped length2,491,058
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006094385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP035288.1=NZ_CP035288.1
Plasmid unnamed1CP035289.1=NZ_CP035289.1
Plasmid unnamed2CP035290.1=NZ_CP035290.1

Assembly statistics

MoleculeTotal
Length
All2,491,058
Chromosome 2,466,502
Plasmid unnamed120,117
Plasmid unnamed24,439

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900458605.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458605.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7397.89
Best-match type99.9999.7397.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna