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ASM868995v1

Organism name:
Weissella paramesenteroides (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DmW_115113
BioSample:
SAMN12113456
BioProject:
PRJNA550209
Submitter:
Brigham Young University
Date:
2019/09/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008689955.1 (latest)
RefSeq assembly accession:
GCF_008689955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VHPE01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
153x
Sequencing technology:
Illumina 2x125

IDs: 4717881 [UID] 14061208 [GenBank] 14087608 [RefSeq]

See Genome Information for Weissella paramesenteroides

There are 48 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/25/2019 15:47:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,981
CDSs (total)::1,906
Genes (coding)::1,886
CDSs (with protein)::1,886
Genes (RNA)::75
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (23S)
partial rRNAs::2, 1 (5S, 16S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::10 of 20
Pseudo Genes (incomplete)::5 of 20
Pseudo Genes (internal stop)::7 of 20
Pseudo Genes (multiple problems)::2 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,001,409
Total ungapped length2,001,409
Number of contigs24
Contig N50244,248
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,001,409242,001,409244,24800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Weissella paramesenteroidesWeissella paramesenteroides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160575.1Weissella paramesenteroides ATCC 33313type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160575.1Weissella paramesenteroidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3385.1386.83
Best-match type98.3385.1386.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna