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ASM929930v1

Organism name:: Georgenia thermotolerans (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: DSM:21501
Infraspecific name:: Strain: DSM 21501
BioSample:: SAMN13028014
BioProject:: PRJNA543373
Submitter:: National Institute for Communicable Disease Control and Prevention, China CDC
Date:: 2019/10/25
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_009299305.1 (latest)
RefSeq assembly accession:: GCF_009299305.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: WHJE01
Assembly method:: SOAPdenovo v. 2.0
Expected final version:: yes
Genome coverage:: 10.0x
Sequencing technology:: PacBio

IDs: 5027031 [UID] 14772538 [GenBank] 14836588 [RefSeq]

See Genome Information for Georgenia thermotolerans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009299305.1	=	GCF_009299305.1	ASM929930v1	Contig	Latest GenBank, Latest RefSeq

Comment

Annotation was added in November 2019.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/26/2019 20:40:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,264
CDSs (total)::4,209
Genes (coding)::4,130
CDSs (with protein)::4,130
Genes (RNA)::55
rRNAs::1, 2 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::2 (23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::79
CDSs (without protein)::79
Pseudo Genes (ambiguous residues)::0 of 79
Pseudo Genes (frameshifted)::23 of 79
Pseudo Genes (incomplete)::58 of 79
Pseudo Genes (internal stop)::4 of 79
Pseudo Genes (multiple problems)::6 of 79
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,545,324
Total ungapped length	4,545,324
Number of contigs	319
Contig N50	30,920
Contig L50	41
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	319

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.76	97.76
Best-match type	99.98	99.76	97.76

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ASM929930v1

See Genome Information for Georgenia thermotolerans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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