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ASM982305v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: G40
BioSample:
SAMN11928125
BioProject:
PRJNA545690
Submitter:
Sichuan University
Date:
2019/12/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009823055.1 (latest)
RefSeq assembly accession:
GCF_009823055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VDKZ01
Assembly method:
SPAdes v. 3.10
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq

IDs: 5429841 [UID] 15718408 [GenBank] 15806898 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 277974 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,115,070
Total ungapped length5,114,504
Gaps between scaffolds0
Number of scaffolds549
Scaffold N5091,220
Scaffold L5016
Number of contigs553
Contig N5091,220
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)549

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,115,0705495,114,50491,22040

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2485.3982.00
Best-match type99.2485.3982.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna