U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1100957v1

Organism name:
Weissella paramesenteroides (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: N43
BioSample:
SAMN10822537
BioProject:
PRJNA517196
Submitter:
University of Surrey
Date:
2020/02/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_011009575.1 (latest)
RefSeq assembly accession:
GCF_011009575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SDQP01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
20x
Sequencing technology:
Illumina MiSeq

IDs: 6070891 [UID] 17262178 [GenBank] 17325378 [RefSeq]

See Genome Information for Weissella paramesenteroides

There are 48 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/28/2019 13:25:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,937
CDSs (total)::1,840
Genes (coding)::1,829
CDSs (with protein)::1,829
Genes (RNA)::97
rRNAs::8, 10, 5 (5S, 16S, 23S)
complete rRNAs::6, 1 (5S, 23S)
partial rRNAs::2, 10, 4 (5S, 16S, 23S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::4 of 11
Pseudo Genes (incomplete)::4 of 11
Pseudo Genes (internal stop)::3 of 11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,943,601
Total ungapped length1,943,601
Number of contigs20
Contig N50502,389
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,943,601201,943,601502,38900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Weissella paramesenteroidesWeissella paramesenteroides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160575.1Weissella paramesenteroides ATCC 33313type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160575.1Weissella paramesenteroidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5586.6585.83
Best-match type98.5586.6585.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna