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ASM1137866v1

Organism name:
Pseudoalteromonas sp. C1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C1(2019)
BioSample:
SAMN13567228
BioProject:
PRJNA595763
Submitter:
Shandong University
Date:
2020/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_011378665.1 (latest)
RefSeq assembly accession:
GCF_011378665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WTKR01
Assembly method:
GS De Novo Assembler v. 2.8
Expected final version:
yes
Genome coverage:
161.6x
Sequencing technology:
Illumina MiSeq

IDs: 6268221 [UID] 17713918 [GenBank] 17779248 [RefSeq]

See Genome Information for Pseudoalteromonas sp. C1

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,463,846
Total ungapped length4,463,846
Number of contigs84
Contig N50188,907
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,463,846844,463,846188,90700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoalteromonas sp. C1Pseudoalteromonas sp. C1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000238395.4Pseudoalteromonas arcticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.3286.3081.59

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna