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ASM1405844v2

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: MBT-5
BioSample:
SAMN15423745
BioProject:
PRJNA643697
Submitter:
Max Rubner-Institut
Date:
2020/09/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_014058445.2 (latest)
RefSeq assembly accession:
GCF_014058445.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
"Other" Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
260.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 8186861 [UID] 22364758 [GenBank] 22411828 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266722 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/15/2023 02:13:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,121
CDSs (total)::5,980
Genes (coding)::5,536
CDSs (with protein)::5,536
Genes (RNA)::141
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::107
ncRNAs::12
Pseudo Genes (total)::444
CDSs (without protein)::444
Pseudo Genes (ambiguous residues)::0 of 444
Pseudo Genes (frameshifted)::240 of 444
Pseudo Genes (incomplete)::204 of 444
Pseudo Genes (internal stop)::75 of 444
Pseudo Genes (multiple problems)::68 of 444
Pseudo Genes (short protein)::3 of 444
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,936,184
Total ungapped length5,936,184
Total number of chromosomes and plasmids7

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014058455.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP058682.2=NZ_CP058682.2
Plasmid unnamed1CP058683.1=NZ_CP058683.1
Plasmid unnamed2CP058684.1=NZ_CP058684.1
Plasmid unnamed3CP058685.1=NZ_CP058685.1
Plasmid unnamed4CP058686.1=NZ_CP058686.1
Plasmid unnamed5CP058687.1=NZ_CP058687.1
Plasmid unnamed6CP058688.1=NZ_CP058688.1

Assembly statistics

MoleculeTotal
Length
All5,936,184
Chromosome 5,705,580
Plasmid unnamed192,578
Plasmid unnamed289,589
Plasmid unnamed334,196
Plasmid unnamed46,715
Plasmid unnamed54,742
Plasmid unnamed62,784

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000459055.1Escherichia coli HVH 200 (4-4449924)claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000459055.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9076.1785.80
Best-match type98.9076.1785.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna