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RJC1_Hi-C

Organism name:
Jatropha curcas (eudicots)
Isolate:
ELGS0001-1231
BioSample:
SAMN15963826
BioProject:
PRJNA601606
Submitter:
Reliance Industries Ltd.
Date:
2020/10/05
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014843425.1 (latest)
RefSeq assembly accession:
GCF_014843425.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
JACVEQ01
Assembly method:
SALSA2 v. 2019
Expected final version:
yes
Reference guided assembly:
GCA_004143595.1
Genome coverage:
190.0x
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8222491 [UID] 22453648 [GenBank] 22876068 [RefSeq]

See Genome Information for Jatropha curcas

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length266,964,007
Total ungapped length265,888,429
Gaps between scaffolds0
Number of scaffolds1,232
Scaffold N501,581,322
Scaffold L5036
Number of contigs3,383
Contig N50134,284
Contig L50507
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,232

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced266,800,1511,231265,724,5731,581,3222,1510
MoleculeTotal
Length
Chloroplast Pltd163,856