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ASM1485658v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: PMKI-8-D
BioSample:
SAMN12518057
BioProject:
PRJNA559089
Submitter:
Mohammad Ali Jinnah University
Date:
2020/10/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_014856585.1 (latest)
RefSeq assembly accession:
GCF_014856585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VXJD01
Assembly method:
CLC NGS Cell v. 1.0
Expected final version:
no
Genome coverage:
12.0x
Sequencing technology:
Illumina HiSeq

IDs: 8228671 [UID] 22466548 [GenBank] 22476348 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1053 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Dr. M. Kamran Azim
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2019 14:23:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,384
CDSs (total)::4,319
Genes (coding)::4,132
CDSs (with protein)::4,132
Genes (RNA)::65
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::57
ncRNAs::5
Pseudo Genes (total)::187
CDSs (without protein)::187
Pseudo Genes (ambiguous residues)::0 of 187
Pseudo Genes (frameshifted)::143 of 187
Pseudo Genes (incomplete)::47 of 187
Pseudo Genes (internal stop)::42 of 187
Pseudo Genes (multiple problems)::40 of 187
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,050,649
Total ungapped length4,050,649
Number of contigs120
Contig N5084,319
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,050,6491204,050,64984,31900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5192.8689.23
Best-match type98.5192.8689.23

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna