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Source database (GenBank or RefSeq) File type

NSTDA_Pmon_1

This assembly has been replaced. See current version

Organism name:

Penaeus monodon (black tiger shrimp)

Isolate:

SGIC_2016

BioSample:

SAMN14330694

BioProject:

PRJNA611030

Submitter:

SAFE-Aqua

Date:

2020/11/05

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_015228065.1 (latest)

RefSeq assembly accession:

GCF_015228065.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JABERT01

Assembly method:

WTDBG2 v. April-2019; Chicago HiRise v. August-2019; HiC HiRise v. September-2019

Expected final version:

Genome coverage:

189.0x

Sequencing technology:

PacBio Sequel; Illumina NovaSeq

IDs: 8421181 [UID] 22920228 [GenBank] 23269358 [RefSeq]

See Genome Information for Penaeus monodon

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015228065.1	≠	GCF_015228065.2	NSTDA_Pmon_1	Chromosome	Latest GenBank, Latest RefSeq
GCA_015228065.1	≠	GCF_015228065.1	NSTDA_Pmon_1	Chromosome	Latest GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,394,347,767
Total ungapped length	2,000,783,594
Gaps between scaffolds	0
Number of scaffolds	26,876
Scaffold N50	44,862,054
Scaffold L50	23
Number of contigs	1,185,585
Contig N50	45,084
Contig L50	8,354
Total number of chromosomes and plasmids	45
Number of component sequences (WGS or clone)	26,876

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026926.1	=	NC_051386.1	0
Chromosome 2	CM026927.1	=	NC_051387.1	0
Chromosome 3	CM026928.1	=	NC_051388.1	0
Chromosome 4	CM026929.1	=	NC_051389.1	0
Chromosome 5	CM026930.1	=	NC_051390.1	0
Chromosome 6	CM026931.1	=	NC_051391.1	0
Chromosome 7	CM026932.1	=	NC_051392.1	0
Chromosome 8	CM026933.1	=	NC_051393.1	0
Chromosome 9	CM026934.1	=	NC_051394.1	0
Chromosome 10	CM026935.1	=	NC_051395.1	0
Chromosome 11	CM026936.1	=	NC_051396.1	0
Chromosome 12	CM026937.1	=	NC_051397.1	0
Chromosome 13	CM026938.1	=	NC_051398.1	0
Chromosome 14	CM026939.1	=	NC_051399.1	0
Chromosome 15	CM026940.1	=	NC_051400.1	0
Chromosome 16	CM026941.1	=	NC_051401.1	0
Chromosome 17	CM026942.1	=	NC_051402.1	0
Chromosome 18	CM026943.1	=	NC_051403.1	0
Chromosome 19	CM026944.1	=	NC_051404.1	0
Chromosome 20	CM026945.1	=	NC_051405.1	0
Chromosome 21	CM026946.1	=	NC_051406.1	0
Chromosome 22	CM026947.1	=	NC_051407.1	0
Chromosome 23	CM026948.1	=	NC_051408.1	0
Chromosome 24	CM026949.1	=	NC_051409.1	0
Chromosome 25	CM026950.1	=	NC_051410.1	0
Chromosome 26	CM026951.1	=	NC_051411.1	0
Chromosome 27	CM026952.1	=	NC_051412.1	0
Chromosome 28	CM026953.1	=	NC_051413.1	0
Chromosome 29	CM026954.1	=	NC_051414.1	0
Chromosome 30	CM026955.1	=	NC_051415.1	0
Chromosome 31	CM026956.1	=	NC_051416.1	0
Chromosome 32	CM026957.1	=	NC_051417.1	0
Chromosome 33	CM026958.1	=	NC_051418.1	0
Chromosome 34	CM026959.1	=	NC_051419.1	0
Chromosome 35	CM026960.1	=	NC_051420.1	0
Chromosome 36	CM026961.1	=	NC_051421.1	0
Chromosome 37	CM026962.1	=	NC_051422.1	0
Chromosome 38	CM026963.1	=	NC_051423.1	0
Chromosome 39	CM026964.1	=	NC_051424.1	0
Chromosome 40	CM026965.1	=	NC_051425.1	0
Chromosome 41	CM026966.1	=	NC_051426.1	0
Chromosome 42	CM026967.1	=	NC_051427.1	0
Chromosome 43	CM026968.1	=	NC_051428.1	0
Chromosome 44	CM026969.1	=	NC_051429.1	0
unplaced	n/a	n/a	n/a	26,831

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,394,331,783	26,875	2,000,767,610	44,862,054	1,158,709
Chromosome 1	65,869,259	1	65,734,059	65,869,259	1,352
Chromosome 2	62,915,132	1	62,769,332	62,915,132	1,458
Chromosome 3	62,578,810	1	62,460,310	62,578,810	1,185
Chromosome 4	61,028,141	1	60,901,641	61,028,141	1,265
Chromosome 5	58,666,588	1	58,546,588	58,666,588	1,200
Chromosome 6	58,596,817	1	58,475,817	58,596,817	1,210
Chromosome 7	57,141,761	1	57,020,561	57,141,761	1,212
Chromosome 8	56,717,241	1	56,612,941	56,717,241	1,043
Chromosome 9	54,484,083	1	54,358,483	54,484,083	1,256
Chromosome 10	53,922,881	1	53,808,281	53,922,881	1,146
Chromosome 11	52,644,662	1	52,540,562	52,644,662	1,041
Chromosome 12	52,522,698	1	52,404,698	52,522,698	1,180
Chromosome 13	52,186,350	1	52,088,150	52,186,350	982
Chromosome 14	51,471,297	1	51,371,297	51,471,297	1,000
Chromosome 15	51,242,608	1	21,950,775	51,242,608	85,395
Chromosome 16	50,310,026	1	50,202,026	50,310,026	1,080
Chromosome 17	49,790,156	1	49,693,056	49,790,156	971
Chromosome 18	49,486,070	1	49,375,870	49,486,070	1,102
Chromosome 19	49,313,812	1	21,334,694	49,313,812	80,874
Chromosome 20	47,238,735	1	19,924,319	47,238,735	77,131
Chromosome 21	46,183,865	1	19,728,842	46,183,865	77,741
Chromosome 22	44,964,020	1	20,191,508	44,964,020	72,660
Chromosome 23	44,862,054	1	18,719,697	44,862,054	75,097
Chromosome 24	44,090,619	1	18,043,853	44,090,619	75,448
Chromosome 25	44,027,960	1	19,476,533	44,027,960	70,207
Chromosome 26	43,591,356	1	43,492,256	43,591,356	991
Chromosome 27	41,201,355	1	17,042,114	41,201,355	66,590
Chromosome 28	40,418,865	1	17,253,442	40,418,865	68,222
Chromosome 29	39,960,250	1	17,437,377	39,960,250	67,650
Chromosome 30	39,116,135	1	16,932,475	39,116,135	63,466
Chromosome 31	38,562,624	1	15,788,737	38,562,624	62,749
Chromosome 32	37,928,585	1	16,508,236	37,928,585	59,750
Chromosome 33	36,654,532	1	16,351,868	36,654,532	63,849
Chromosome 34	35,565,386	1	14,117,462	35,565,386	61,533
Chromosome 35	35,550,611	1	35,466,111	35,550,611	845
Chromosome 36	34,911,466	1	34,836,866	34,911,466	746
Chromosome 37	34,780,806	1	34,710,106	34,780,806	707
Chromosome 38	34,638,043	1	34,560,443	34,638,043	776
Chromosome 39	34,305,237	1	34,217,137	34,305,237	881
Chromosome 40	33,442,299	1	33,361,399	33,442,299	809
Chromosome 41	32,559,802	1	32,488,102	32,559,802	717
Chromosome 42	32,211,772	1	32,127,572	32,211,772	842
Chromosome 43	31,942,528	1	31,868,628	31,942,528	739
Chromosome 44	6,423,705	1	6,397,705	6,423,705	260
unplaced	408,310,781	26,831	408,075,681	20,400	2,351

Assembly

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NSTDA_Pmon_1

See Genome Information for Penaeus monodon

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear