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ASM1523496v1

Organism name:
Pasteurella sp. 19428wF3_WM03 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 19428wF3_WM03
BioSample:
SAMN16540208
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015234965.1 (latest)
RefSeq assembly accession:
GCF_015234965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGKV01
Assembly method:
SPAdes v. 3.1.37
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420771 [UID] 22916808 [GenBank] 22931818 [RefSeq]

See Genome Information for Pasteurella sp. 19428wF3_WM03

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 17:25:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,196
CDSs (total)::2,130
Genes (coding)::2,077
CDSs (with protein)::2,077
Genes (RNA)::66
rRNAs::5, 3, 3 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::23 of 53
Pseudo Genes (incomplete)::21 of 53
Pseudo Genes (internal stop)::21 of 53
Pseudo Genes (multiple problems)::9 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,266,646
Total ungapped length2,266,646
Number of contigs32
Contig N50186,398
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,266,646322,266,646186,39800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella sp. 19428wF3_WM03Pasteurella sp. 19428wF3_WM03

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001998825.1Rodentibacter mraziitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2969.3163.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna