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Gae_host_genome

Organism name:
Gigantopelta aegis (gastropods)
Isolate:
Gae_Host
BioSample:
SAMN16968444
BioProject:
PRJNA612619
Submitter:
Hong Kong University of Science and Technology
Date:
2020/12/17
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016097555.1 (latest)
RefSeq assembly accession:
GCF_016097555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAEHGF01
Assembly method:
wtdbg2 v. 2.1; 3D-DNA v. 1
Expected final version:
no
Genome coverage:
100x
Sequencing technology:
Illumina NovaSeq; PacBio Sequel; Hi-C

IDs: 8858351 [UID] 23970298 [GenBank] 26615658 [RefSeq]

See Genome Information for Gigantopelta aegis

History (Show revision history)

Comment

Global statistics

Total sequence length1,149,605,642
Total ungapped length1,148,756,042
Gaps between scaffolds0
Number of scaffolds5,231
Scaffold N5081,591,406
Scaffold L506
Number of contigs9,479
Contig N50461,769
Contig L50671
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)5,231

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016097785.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027790.1=NC_054699.10
Chromosome 2CM027791.1=NC_054700.10
Chromosome 3CM027792.1=NC_054701.10
Chromosome 4CM027793.1=NC_054702.10
Chromosome 5CM027794.1=NC_054703.10
Chromosome 6CM027795.1=NC_054704.10
Chromosome 7CM027796.1=NC_054705.10
Chromosome 8CM027797.1=NC_054706.10
Chromosome 9CM027798.1=NC_054707.10
Chromosome 10CM027799.1=NC_054708.10
Chromosome 11CM027800.1=NC_054709.10
Chromosome 12CM027801.1=NC_054710.10
Chromosome 13CM027802.1=NC_054711.10
Chromosome 14CM027803.1=NC_054712.10
Chromosome 15CM027804.1=NC_054713.10
unplacedn/an/an/a5,216

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,149,605,6425,2311,148,756,04281,591,4064,2480
Chromosome 147,317,128147,267,92847,317,1282460
Chromosome 254,566,076154,536,67654,566,0761470
Chromosome 396,789,575196,729,77596,789,5752990
Chromosome 4120,622,2781120,549,478120,622,2783640
Chromosome 540,821,028140,751,42840,821,0283480
Chromosome 6102,884,7491102,820,949102,884,7493190
Chromosome 747,477,099147,417,89947,477,0992960
Chromosome 881,591,406181,532,80681,591,4062930
Chromosome 984,917,595184,867,59584,917,5952500
Chromosome 1091,665,651191,600,05191,665,6513280
Chromosome 1135,397,884135,362,08435,397,8841790
Chromosome 1253,390,639153,302,83953,390,6394390
Chromosome 1342,253,053142,192,45342,253,0533030
Chromosome 1459,883,994159,844,99459,883,9941950
Chromosome 1546,388,186146,345,98646,388,1862110
unplaced143,639,3015,216143,633,10148,102310