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SaNama_1.0

Organism name:
Salvelinus namaycush (lake trout)
Isolate:
Seneca
Sex:
female
BioSample:
SAMN16985724
BioProject:
PRJNA682269
Submitter:
Universite Laval
Date:
2021/01/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016432855.1 (latest)
RefSeq assembly accession:
GCF_016432855.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
JAEAGN01
Assembly method:
FALCON v. smrtlink-release_6.0.0.47841; Arrow v. smrtlink-release_6.0.0.47841; Pilon v. 1.23; Salsa v. 2.2; Chromonomer v. 1.13; PBSuite (PBJelly) v. 15.8.24; MaSuRCA (POLCA) v. 3.4.2
Expected final version:
yes
Genome coverage:
89.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq; Hi-C

IDs: 9077261 [UID] 24458738 [GenBank] 24508998 [RefSeq]

See Genome Information for Salvelinus namaycush

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,345,513,378
Total ungapped length2,345,186,978
Gaps between scaffolds0
Number of scaffolds4,121
Scaffold N5044,976,251
Scaffold L5020
Number of contigs7,385
Contig N501,804,090
Contig L50252
Total number of chromosomes and plasmids43
Number of component sequences (WGS or clone)4,121

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016433055.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome Sna1CM028250.1=NC_052307.10
Chromosome Sna2CM028261.1=NC_052308.10
Chromosome Sna3CM028272.1=NC_052309.10
Chromosome Sna4CM028283.1=NC_052310.10
Chromosome Sna5CM028287.1=NC_052311.10
Chromosome Sna6CM028288.1=NC_052312.10
Chromosome Sna7CM028289.1=NC_052313.10
Chromosome Sna8CM028290.1=NC_052314.10
Chromosome Sna9CM028291.1=NC_052315.10
Chromosome Sna10CM028251.1=NC_052316.10
Chromosome Sna11CM028252.1=NC_052317.10
Chromosome Sna12CM028253.1=NC_052318.10
Chromosome Sna13CM028254.1=NC_052319.10
Chromosome Sna14CM028255.1=NC_052320.10
Chromosome Sna15CM028256.1=NC_052321.10
Chromosome Sna16CM028257.1=NC_052322.10
Chromosome Sna17CM028258.1=NC_052323.10
Chromosome Sna18CM028259.1=NC_052324.10
Chromosome Sna19CM028260.1=NC_052325.10
Chromosome Sna20CM028262.1=NC_052326.10
Chromosome Sna21CM028263.1=NC_052327.10
Chromosome Sna22CM028264.1=NC_052328.10
Chromosome Sna23CM028265.1=NC_052329.10
Chromosome Sna24CM028266.1=NC_052330.10
Chromosome Sna25CM028267.1=NC_052331.10
Chromosome Sna26CM028268.1=NC_052332.10
Chromosome Sna27CM028269.1=NC_052333.10
Chromosome Sna28CM028270.1=NC_052334.10
Chromosome Sna29CM028271.1=NC_052335.10
Chromosome Sna30CM028273.1=NC_052336.10
Chromosome Sna31CM028274.1=NC_052337.10
Chromosome Sna32CM028275.1=NC_052338.10
Chromosome Sna33CM028276.1=NC_052339.10
Chromosome Sna34CM028277.1=NC_052340.10
Chromosome Sna35CM028278.1=NC_052341.10
Chromosome Sna36CM028279.1=NC_052342.10
Chromosome Sna37CM028280.1=NC_052343.10
Chromosome Sna38CM028281.1=NC_052344.10
Chromosome Sna39CM028282.1=NC_052345.10
Chromosome Sna40CM028284.1=NC_052346.10
Chromosome Sna41CM028285.1=NC_052347.10
Chromosome Sna42CM028286.1=NC_052348.10
unplacedn/an/an/a4,078

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,345,496,7254,1202,345,170,32544,976,2513,2640
Chromosome Sna184,126,519184,114,91984,126,5191160
Chromosome Sna280,899,063180,887,96380,899,0631110
Chromosome Sna398,200,354198,190,05498,200,3541030
Chromosome Sna484,641,001184,630,40184,641,0011060
Chromosome Sna574,663,310174,649,81074,663,3101350
Chromosome Sna653,240,245153,230,74553,240,245950
Chromosome Sna760,867,288160,855,68860,867,2881160
Chromosome Sna866,761,985166,755,78566,761,985620
Chromosome Sna955,829,577155,824,77755,829,577480
Chromosome Sna1050,033,745150,027,04550,033,745670
Chromosome Sna1145,826,067145,821,16745,826,067490
Chromosome Sna1253,577,799153,571,09953,577,799670
Chromosome Sna1346,786,966146,781,86646,786,966510
Chromosome Sna1442,619,425142,615,12542,619,425430
Chromosome Sna1541,983,602141,977,50241,983,602610
Chromosome Sna1649,273,740149,266,54049,273,740720
Chromosome Sna1738,583,745138,573,74538,583,7451000
Chromosome Sna1844,551,619144,546,41944,551,619520
Chromosome Sna1952,362,073152,356,07352,362,073600
Chromosome Sna2057,374,494157,369,99457,374,494450
Chromosome Sna2156,749,016156,743,51656,749,016550
Chromosome Sna2236,590,957136,585,55736,590,957540
Chromosome Sna2344,976,251144,968,95144,976,251730
Chromosome Sna2437,729,534137,723,33437,729,534620
Chromosome Sna2542,232,641142,228,44142,232,641420
Chromosome Sna2643,795,290143,789,19043,795,290610
Chromosome Sna2739,899,027139,892,32739,899,027670
Chromosome Sna2846,733,465146,726,36546,733,465710
Chromosome Sna2937,922,142137,917,94237,922,142420
Chromosome Sna3035,580,863135,575,26335,580,863560
Chromosome Sna3148,336,861148,331,16148,336,861570
Chromosome Sna3237,237,428137,230,92837,237,428650
Chromosome Sna3337,339,918137,334,51837,339,918540
Chromosome Sna3442,032,554142,025,35442,032,554720
Chromosome Sna3534,530,387134,527,28734,530,387310
Chromosome Sna3627,026,048127,020,84827,026,048520
Chromosome Sna3732,124,714132,119,91432,124,714480
Chromosome Sna3826,015,404126,009,70426,015,404570
Chromosome Sna3923,589,395123,586,39523,589,395300
Chromosome Sna4023,598,771123,594,57123,598,771420
Chromosome Sna4122,041,605122,038,70522,041,605290
Chromosome Sna4223,094,928123,092,22823,094,928270
unplaced364,116,9094,078364,061,109160,4505580
MoleculeTotal
Length
Mitochondrion MT16,653