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ASM1669680v1

Organism name:
Flavonifractor plautii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: YL31
BioSample:
SAMN16911577
BioProject:
PRJNA680355
Submitter:
Institut Pasteur
Date:
2021/01/19
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016696805.1 (latest)
RefSeq assembly accession:
GCF_016696805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. Sep-2020
Expected final version:
yes
Genome coverage:
1x
Sequencing technology:
Illumina

IDs: 9151501 [UID] 24646178 [GenBank] 24690468 [RefSeq]

See Genome Information for Flavonifractor plautii

There are 160 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_016696805.1-RS_2024_04_16
Annotation Date::04/16/2024 07:22:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,755
CDSs (total)::3,690
Genes (coding)::3,650
CDSs (with protein)::3,650
Genes (RNA)::65
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::40
CDSs (without protein)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::8 of 40
Pseudo Genes (incomplete)::33 of 40
Pseudo Genes (internal stop)::6 of 40
Pseudo Genes (multiple problems)::7 of 40
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,813,715
Total ungapped length3,813,655
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,813,715
Scaffold L501
Number of contigs7
Contig N502,387,062
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016696815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP065315.1=NZ_CP065315.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 3,813,71513,813,6553,813,71560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flavonifractor plautiiFlavonifractor plautii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010508875.1Flavonifractor plautiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010508875.1Flavonifractor plautiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3381.4877.97
Best-match type98.3381.4877.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna