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ASM1671975v1

Organism name:
Novosphingobium sp. (a-proteobacteria)
Taxonomy check:
OK
Isolate:
Lyne_18-Q3-R50-59_BATAC.36
BioSample:
SAMN16426229
BioProject:
PRJNA629478
Submitter:
Aalborg University
Date:
2021/01/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_016719755.1 (latest)
RefSeq assembly accession:
GCF_016719755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADJYM01
Assembly method:
CANU v. 1.8
Expected final version:
yes
Genome coverage:
26.562424x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 9167951 [UID] 24669218 [GenBank] 44872068 [RefSeq]

See Genome Information for Novosphingobium sp.

There are 209 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2020 05:45:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,668
CDSs (total)::3,603
Genes (coding)::3,361
CDSs (with protein)::3,361
Genes (RNA)::65
rRNAs::2, 2, 3 (5S, 16S, 23S)
complete rRNAs::2, 2, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::242
CDSs (without protein)::242
Pseudo Genes (ambiguous residues)::0 of 242
Pseudo Genes (frameshifted)::208 of 242
Pseudo Genes (incomplete)::59 of 242
Pseudo Genes (internal stop)::27 of 242
Pseudo Genes (multiple problems)::46 of 242
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,706,358
Total ungapped length3,706,358
Number of contigs16
Contig N50617,687
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,706,358163,706,358617,68700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Novosphingobium sp.Novosphingobium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014230305.1Novosphingobium aerophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.0913.7812.19

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna