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ASM1672734v1

Organism name:
Enterococcus casseliflavus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:20680
Infraspecific name:
Strain: FDAARGOS_1120
BioSample:
SAMN16357289
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/01/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016727345.1 (latest)
RefSeq assembly accession:
GCF_016727345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 7.1.0, HGAP v. 4
Genome coverage:
824.73x
Sequencing technology:
Pacbio; Illumina

IDs: 9170111 [UID] 24676888 [GenBank] 24726428 [RefSeq]

See Genome Information for Enterococcus casseliflavus

Pathogen Detection Resources

There are 217 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/06/2024 04:30:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,423
CDSs (total)::3,344
Genes (coding)::3,288
CDSs (with protein)::3,288
Genes (RNA)::79
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::25 of 56
Pseudo Genes (incomplete)::22 of 56
Pseudo Genes (internal stop)::15 of 56
Pseudo Genes (multiple problems)::6 of 56
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,548,503
Total ungapped length3,548,503
Total number of chromosomes and plasmids3

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016727355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP068132.1=NZ_CP068132.1
Plasmid unnamed1CP068131.1=NZ_CP068131.1
Plasmid unnamed2CP068133.1=NZ_CP068133.1

Assembly statistics

MoleculeTotal
Length
All3,548,503
Chromosome 3,438,280
Plasmid unnamed179,290
Plasmid unnamed230,933

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus casseliflavusEnterococcus casseliflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900447665.1Enterococcus casseliflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900447665.1Enterococcus casseliflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0099.81
Best-match type99.99100.0099.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna