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Source database (GenBank or RefSeq) File type

P.virgatum_v5

Organism name:

Panicum virgatum (switchgrass)

Infraspecific name:

Strain: AP13

BioSample:

SAMN00760928

BioProject:

PRJNA40657

Submitter:

DOE Joint Genome Institute

Date:

2021/02/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016808335.1 (latest)

RefSeq assembly accession:

GCF_016808335.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JABWAI01

Assembly method:

MECAT v1.8

Genome coverage:

121.66x

Sequencing technology:

PACBIO Sequel

IDs: 9273691 [UID] 24958188 [GenBank] 25053338 [RefSeq]

See Genome Information for Panicum virgatum

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016808335.1	≠	GCF_016808335.1	P.virgatum_v5	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,129,997,604
Total ungapped length	1,125,366,485
Gaps between scaffolds	463
Number of scaffolds	1,090
Scaffold N50	5,460,973
Scaffold L50	62
Number of contigs	1,091
Contig N50	5,460,973
Contig L50	62
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	1,091

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1K	CM029037.1	=	NC_053136.1	0
Chromosome 2K	CM029039.1	=	NC_053137.1	0
Chromosome 3K	CM029041.1	=	NC_053138.1	0
Chromosome 4K	CM029043.1	=	NC_053139.1	0
Chromosome 5K	CM029045.1	=	NC_053140.1	0
Chromosome 6K	CM029047.1	=	NC_053141.1	0
Chromosome 7K	CM029049.1	=	NC_053142.1	0
Chromosome 8K	CM029051.1	=	NC_053143.1	0
Chromosome 9K	CM029053.1	=	NC_053144.1	0
Chromosome 1N	CM029038.1	=	NC_053145.1	0
Chromosome 2N	CM029040.1	=	NC_053146.1	0
Chromosome 3N	CM029042.1	=	NC_053147.1	0
Chromosome 4N	CM029044.1	=	NC_053148.1	0
Chromosome 5N	CM029046.1	=	NC_053149.1	0
Chromosome 6N	CM029048.1	=	NC_053150.1	0
Chromosome 7N	CM029050.1	=	NC_053151.1	0
Chromosome 8N	CM029052.1	=	NC_053152.1	0
Chromosome 9N	CM029054.1	=	NC_053153.1	0
unplaced	n/a	n/a	n/a	608

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,129,857,985	1,089	1,125,226,866	5,460,973	1	463
Chromosome 1K	56,994,302	28	56,724,302	5,752,555	0	27
Chromosome 2K	69,011,629	42	68,601,629	5,451,292	0	41
Chromosome 3K	64,346,616	33	64,026,616	5,889,563	0	32
Chromosome 4K	48,086,818	26	47,836,818	3,971,671	0	25
Chromosome 5K	62,386,477	13	62,266,477	9,143,039	0	12
Chromosome 6K	48,487,553	26	48,236,434	3,245,365	1	25
Chromosome 7K	52,908,697	50	52,418,697	3,723,617	0	49
Chromosome 8K	56,040,097	24	55,810,097	4,888,732	0	23
Chromosome 9K	71,063,020	21	70,863,020	6,965,648	0	20
Chromosome 1N	67,001,661	28	66,731,661	7,386,445	0	27
Chromosome 2N	70,326,446	22	70,116,446	6,101,756	0	21
Chromosome 3N	70,036,293	24	69,806,293	6,187,413	0	23
Chromosome 4N	50,680,782	16	50,530,782	5,128,370	0	15
Chromosome 5N	72,287,751	23	72,067,751	6,406,748	0	22
Chromosome 6N	53,464,807	28	53,194,807	4,555,676	0	27
Chromosome 7N	51,141,238	26	50,891,238	6,305,009	0	25
Chromosome 8N	51,069,536	26	50,819,536	5,140,929	0	25
Chromosome 9N	83,095,581	25	82,855,581	6,920,971	0	24
unplaced	31,428,681	608	31,428,681	59,807	0	0

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P.virgatum_v5

See Genome Information for Panicum virgatum

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear