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Source database (GenBank or RefSeq) File type

ASM1689010v1

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: FDA:FDAARGOS_1266
Infraspecific name:: Strain: FDAARGOS_1266
BioSample:: SAMN16357408
BioProject:: PRJNA231221
Submitter:: US Food and Drug Administration
Date:: 2021/02/15
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_016890105.1 (latest)
RefSeq assembly accession:: GCF_016890105.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.14.1
Genome coverage:: 586.93x
Sequencing technology:: Pacbio; Illumina

IDs: 9289391 [UID] 25006568 [GenBank] 25014888 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 276278 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016890105.1	=	GCF_016890105.1	ASM1689010v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_016890105.1-RS_2024_06_27
Annotation Date::06/27/2024 04:31:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,165
CDSs (total)::5,052
Genes (coding)::4,839
CDSs (with protein)::4,839
Genes (RNA)::113
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::5
Pseudo Genes (total)::213
CDSs (without protein)::213
Pseudo Genes (ambiguous residues)::0 of 213
Pseudo Genes (frameshifted)::74 of 213
Pseudo Genes (incomplete)::152 of 213
Pseudo Genes (internal stop)::42 of 213
Pseudo Genes (multiple problems)::47 of 213
Pseudo Genes (short protein)::1 of 213
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,215,978
Total ungapped length	5,215,978
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP069589.1	=	NZ_CP069589.1
Plasmid unnamed1	CP069590.1	=	NZ_CP069590.1
Plasmid unnamed2	CP069591.1	=	NZ_CP069591.1
Plasmid unnamed3	CP069592.1	=	NZ_CP069592.1

Molecule	Total Length
All	5,215,978
Chromosome	5,080,830
Plasmid unnamed1	127,965
Plasmid unnamed2	5,631
Plasmid unnamed3	1,552

	ANI	Query coverage	Subject coverage
Declared type	99.92	97.46	95.09
Best-match type	99.92	97.46	95.09

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ASM1689010v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 276278 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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