U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1690455v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: FDA:FDAARGOS_1285
Infraspecific name:
Strain: FDAARGOS_1285
BioSample:
SAMN16357427
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016904555.1 (latest)
RefSeq assembly accession:
GCF_016904555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
1142.84x
Sequencing technology:
Pacbio; Illumina

IDs: 9297531 [UID] 25031328 [GenBank] 25059918 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 274343 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/17/2023 05:22:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,977
CDSs (total)::4,862
Genes (coding)::4,599
CDSs (with protein)::4,599
Genes (RNA)::115
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::5
Pseudo Genes (total)::263
CDSs (without protein)::263
Pseudo Genes (ambiguous residues)::0 of 263
Pseudo Genes (frameshifted)::148 of 263
Pseudo Genes (incomplete)::120 of 263
Pseudo Genes (internal stop)::33 of 263
Pseudo Genes (multiple problems)::35 of 263
Pseudo Genes (short protein)::5 of 263
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,189,441
Total ungapped length5,189,441
Total number of chromosomes and plasmids6

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016904565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP070152.1=NZ_CP070152.1
Plasmid unnamed1CP070151.1=NZ_CP070151.1
Plasmid unnamed2CP070153.1=NZ_CP070153.1
Plasmid unnamed3CP070154.1=NZ_CP070154.1
Plasmid unnamed4CP070155.1=NZ_CP070155.1
Plasmid unnamed5CP070156.1=NZ_CP070156.1

Assembly statistics

MoleculeTotal
Length
All5,189,441
Chromosome 5,045,492
Plasmid unnamed1136,864
Plasmid unnamed23,004
Plasmid unnamed31,627
Plasmid unnamed41,293
Plasmid unnamed51,161

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000019645.1Escherichia coli SMS-3-5claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000019645.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5688.2787.83
Best-match type98.5688.2787.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna