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ASM1716292v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: RB9
BioSample:
SAMN17164306
BioProject:
PRJNA687988
Submitter:
University of Georgia
Date:
2021/03/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_017162925.1 (latest)
RefSeq assembly accession:
GCF_017162925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFJWZ01
Assembly method:
SPAdes v. 3.14.1
Expected final version:
no
Genome coverage:
55.3498x
Sequencing technology:
Illumina MiSeq

IDs: 9429801 [UID] 25322878 [GenBank] 25389748 [RefSeq]

See Genome Information for Escherichia coli

There are 277778 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2021 14:48:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,488
CDSs (total)::5,363
Genes (coding)::5,109
CDSs (with protein)::5,109
Genes (RNA)::125
rRNAs::9, 9, 13 (5S, 16S, 23S)
complete rRNAs::7 (5S)
partial rRNAs::2, 9, 13 (5S, 16S, 23S)
tRNAs::85
ncRNAs::9
Pseudo Genes (total)::254
CDSs (without protein)::254
Pseudo Genes (ambiguous residues)::0 of 254
Pseudo Genes (frameshifted)::86 of 254
Pseudo Genes (incomplete)::168 of 254
Pseudo Genes (internal stop)::38 of 254
Pseudo Genes (multiple problems)::37 of 254
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,388,152
Total ungapped length5,388,152
Number of contigs289
Contig N5077,429
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)289

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,388,1522895,388,15277,42900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2283.0286.76
Best-match type99.2283.0286.76

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna