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ASM1763894v1

Organism name:
Klebsiella variicola (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:BAA-830
Infraspecific name:
Strain: F2R9
BioSample:
SAMN18446056
BioProject:
PRJNA716670
Submitter:
Instituto Nacional de Salud Publica
Date:
2021/03/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_017638945.1 (latest)
RefSeq assembly accession:
GCF_017638945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 2.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore MinION

IDs: 9677501 [UID] 25886628 [GenBank] 25910958 [RefSeq]

See Genome Information for Klebsiella variicola

There are 1753 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Center for Genomic Center, Avenida Universidad s/n, Universidad Autonoma del Estado de Morelos, 62210 Cuernavaca, Mor.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/05/2024 07:37:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,325
CDSs (total)::5,203
Genes (coding)::5,110
CDSs (with protein)::5,110
Genes (RNA)::122
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::14
Pseudo Genes (total)::93
CDSs (without protein)::93
Pseudo Genes (ambiguous residues)::0 of 93
Pseudo Genes (frameshifted)::50 of 93
Pseudo Genes (incomplete)::42 of 93
Pseudo Genes (internal stop)::20 of 93
Pseudo Genes (multiple problems)::17 of 93
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,519,584
Total ungapped length5,519,584
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017638955.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP072130.1=NZ_CP072130.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,519,584

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella variicolaKlebsiella variicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000828055.2Klebsiella variicolatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000828055.2Klebsiella variicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.98100.0099.97
Best-match type99.98100.0099.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna