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ASM1876062v1

Organism name:
Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 18-1342
BioSample:
SAMN19375790
BioProject:
PRJNA733331
Submitter:
University of Zurich
Date:
2021/06/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_018760625.1 (latest)
RefSeq assembly accession:
GCF_018760625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHHZT01
Assembly method:
Shovill v. 1.1.0
Expected final version:
yes
Genome coverage:
110x
Sequencing technology:
Illumina MiniSeq

IDs: 10242561 [UID] 27252278 [GenBank] 27290828 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 88 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/02/2021 09:28:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,103
CDSs (total)::2,034
Genes (coding)::1,996
CDSs (with protein)::1,996
Genes (RNA)::69
rRNAs::6, 3, 1 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (5S, 16S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::18 of 38
Pseudo Genes (incomplete)::10 of 38
Pseudo Genes (internal stop)::16 of 38
Pseudo Genes (multiple problems)::5 of 38
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,187,672
Total ungapped length2,187,672
Number of contigs50
Contig N50123,287
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,187,672502,187,672123,28700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniaeActinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000178495.2Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000178495.2Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2596.5191.06
Best-match type98.2596.5191.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna