U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Tspe_v1

Organism name:
Telopea speciosissima (flowering plants)
Infraspecific name:
Ecotype: Mountain lineage
Isolate:
NSW1024214
BioSample:
SAMN18238110
BioProject:
PRJNA712988
Submitter:
Genomics for Australian Plants
Date:
2021/06/14
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018873765.1 (latest)
RefSeq assembly accession:
GCF_018873765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAGEPE01
Assembly method:
NECAT v. APRIL-2020
Expected final version:
no
Genome coverage:
193.0x
Sequencing technology:
Oxford Nanopore PromethION; Oxford Nanopore MinION; Illumina NovaSeq

IDs: 10300781 [UID] 27385218 [GenBank] 28972838 [RefSeq]

See Genome Information for Telopea speciosissima

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length823,061,212
Total ungapped length823,044,912
Gaps between scaffolds0
Number of scaffolds1,289
Scaffold N5069,013,595
Scaffold L506
Number of contigs1,452
Contig N5012,206,888
Contig L5021
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)1,289

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018873925.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM032105.1=NC_057916.10
Chromosome 2CM032106.1=NC_057917.10
Chromosome 3CM032107.1=NC_057918.10
Chromosome 4CM032108.1=NC_057919.10
Chromosome 5CM032109.1=NC_057920.10
Chromosome 6CM032110.1=NC_057921.10
Chromosome 7CM032111.1=NC_057922.10
Chromosome 8CM032112.1=NC_057923.10
Chromosome 9CM032113.1=NC_057924.10
Chromosome 10CM032114.1=NC_057925.10
Chromosome 11CM032115.1=NC_057926.10
unplacedn/an/an/a1,278

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All823,061,2121,289823,044,91269,013,5951630
Chromosome 187,811,904187,810,40487,811,904150
Chromosome 284,316,875184,315,77584,316,875110
Chromosome 372,751,598172,750,49872,751,598110
Chromosome 472,072,459172,069,95972,072,459250
Chromosome 569,929,729169,927,82969,929,729190
Chromosome 669,013,595169,012,89569,013,59570
Chromosome 767,754,596167,753,99667,754,59660
Chromosome 865,806,066165,805,46665,806,06660
Chromosome 963,990,770163,988,57063,990,770220
Chromosome 1063,632,857163,631,35763,632,857150
Chromosome 1157,317,785157,316,78557,317,785100
unplaced48,662,9781,27848,661,37877,100160