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ASM1904830v1

Organism name:
Acinetobacter lwoffii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:2403
Infraspecific name:
Strain: FDAARGOS 1393
BioSample:
SAMN16357535
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/06/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_019048305.1 (latest)
RefSeq assembly accession:
GCF_019048305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1
Genome coverage:
4997.39x
Sequencing technology:
Pacbio; Illumina

IDs: 10391971 [UID] 27595028 [GenBank] 27603498 [RefSeq]

See Genome Information for Acinetobacter lwoffii

Pathogen Detection Resources

There are 81 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_019048305.1-RS_2024_03_30
Annotation Date::03/30/2024 06:17:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,410
CDSs (total)::3,298
Genes (coding)::3,146
CDSs (with protein)::3,146
Genes (RNA)::112
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::87
ncRNAs::4
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::74 of 152
Pseudo Genes (incomplete)::87 of 152
Pseudo Genes (internal stop)::46 of 152
Pseudo Genes (multiple problems)::47 of 152
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,504,477
Total ungapped length3,504,477
Total number of chromosomes and plasmids6

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_019048315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP077336.1=NZ_CP077336.1
Plasmid unnamed1CP077337.1=NZ_CP077337.1
Plasmid unnamed2CP077338.1=NZ_CP077338.1
Plasmid unnamed3CP077339.1=NZ_CP077339.1
Plasmid unnamed4CP077340.1=NZ_CP077340.1
Plasmid unnamed5CP077341.1=NZ_CP077341.1

Assembly statistics

MoleculeTotal
Length
All3,504,477
Chromosome 3,166,595
Plasmid unnamed152,429
Plasmid unnamed2221,423
Plasmid unnamed355,306
Plasmid unnamed45,879
Plasmid unnamed52,845

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter lwoffiiAcinetobacter lwoffii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029024105.1Acinetobacter lwoffiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029024105.1Acinetobacter lwoffiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.5099.66
Best-match type99.9998.5099.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna