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Da-Ae

Organism name:
Brassica napus (rape)
Infraspecific name:
Cultivar: Da-Ae
BioSample:
SAMN14670173
BioProject:
PRJNA627442
Submitter:
None
Date:
2021/10/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020379485.1 (latest)
RefSeq assembly accession:
GCF_020379485.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT, Pltd, linear plasmid
  • Data displayed for RefSeq version
WGS Project:
JAGKQM01
Assembly method:
Canu v. 1.6; Pilon v. 1.22; HiRise v. FEB-2018
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq

IDs: 11134351 [UID] 29393978 [GenBank] 33729818 [RefSeq]

See Genome Information for Brassica napus

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,001,886,053
Total ungapped length1,001,800,256
Gaps between scaffolds0
Number of scaffolds3,167
Scaffold N5048,209,797
Scaffold L509
Number of contigs4,007
Contig N501,580,367
Contig L50177
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)3,167

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020379495.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM035446.1=NC_063434.136
Chromosome A2CM035447.1=NC_063435.140
Chromosome A3CM035448.1=NC_063436.116
Chromosome A4CM035449.1=NC_063437.119
Chromosome A5CM035450.1=NC_063438.144
Chromosome A6CM035451.1=NC_063439.124
Chromosome A7CM035452.1=NC_063440.113
Chromosome A8CM035453.1=NC_063441.113
Chromosome A9CM035454.1=NC_063442.122
Chromosome A10CM035455.1=NC_063443.18
Chromosome C1CM035456.1=NC_063444.118
Chromosome C2CM035457.1=NC_063445.132
Chromosome C3CM035458.1=NC_063446.153
Chromosome C4CM035459.1=NC_063447.130
Chromosome C5CM035460.1=NC_063448.143
Chromosome C6CM035461.1=NC_063449.116
Chromosome C7CM035462.1=NC_063450.135
Chromosome C8CM035463.1=NC_063451.19
Chromosome C9CM035464.1=NC_063452.169
unplacedn/an/an/a2,605

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,001,499,7003,1641,001,413,90348,209,7978400
Chromosome A1AllAssembled moleculeUnlocalized scaffolds32,239,65530,963,4161,276,2393713632,234,95530,958,7161,276,23930,963,41630,963,41637,85747470000
Chromosome A2AllAssembled moleculeUnlocalized scaffolds30,925,21329,581,5821,343,6314114030,921,51329,577,8821,343,63129,581,58229,581,58235,82337370000
Chromosome A3AllAssembled moleculeUnlocalized scaffolds39,195,52438,724,999470,5251711639,192,52438,721,999470,52538,724,99938,724,99932,52930300000
Chromosome A4AllAssembled moleculeUnlocalized scaffolds22,506,54222,079,791426,7512011922,504,74222,077,991426,75122,079,79122,079,79125,30218180000
Chromosome A5AllAssembled moleculeUnlocalized scaffolds30,872,11429,228,5661,643,5484514430,865,31429,221,7661,643,54829,228,56629,228,56647,02568680000
Chromosome A6AllAssembled moleculeUnlocalized scaffolds29,537,85228,937,740600,1122512429,534,45228,934,340600,11228,937,74028,937,74030,18334340000
Chromosome A7AllAssembled moleculeUnlocalized scaffolds28,620,91328,277,616343,2971411328,618,71328,275,416343,29728,277,61628,277,61631,52922220000
Chromosome A8AllAssembled moleculeUnlocalized scaffolds23,567,80923,154,485413,3241411323,565,60923,152,285413,32423,154,48523,154,48537,86722220000
Chromosome A9AllAssembled moleculeUnlocalized scaffolds45,604,15545,044,935559,2202312245,599,35545,040,135559,22045,044,93545,044,93532,52848480000
Chromosome A10AllAssembled moleculeUnlocalized scaffolds19,778,05519,559,996218,05991819,776,55519,558,496218,05919,559,99619,559,99631,96915150000
Chromosome C1AllAssembled moleculeUnlocalized scaffolds51,892,91051,431,623461,2871911851,887,21051,425,923461,28751,431,62351,431,62332,64457570000
Chromosome C2AllAssembled moleculeUnlocalized scaffolds59,051,63858,167,434884,2043313259,045,13858,160,934884,20458,167,43458,167,43431,80165650000
Chromosome C3AllAssembled moleculeUnlocalized scaffolds75,685,44574,222,9281,462,5175415375,677,44574,214,9281,462,51774,222,92874,222,92830,56362620000
Chromosome C4AllAssembled moleculeUnlocalized scaffolds63,806,39262,924,550881,8423113063,800,79362,918,951881,84262,924,55062,924,55031,80456560000
Chromosome C5AllAssembled moleculeUnlocalized scaffolds57,725,01156,537,2241,187,7874414357,719,11156,531,3241,187,78756,537,22456,537,22433,75459590000
Chromosome C6AllAssembled moleculeUnlocalized scaffolds48,683,68548,209,797473,8881711648,679,48648,205,598473,88848,209,79748,209,79736,36342420000
Chromosome C7AllAssembled moleculeUnlocalized scaffolds56,072,08554,958,2581,113,8273613556,068,28654,954,4591,113,82754,958,25854,958,25836,87438380000
Chromosome C8AllAssembled moleculeUnlocalized scaffolds49,506,42849,204,614301,814101949,502,42849,200,614301,81449,204,61449,204,61451,21640400000
Chromosome C9AllAssembled moleculeUnlocalized scaffolds66,632,01664,956,5721,675,4447016966,625,51664,950,0721,675,44464,956,57264,956,57231,31465650000
unplacedAssembled molecule169,596,2582,605169,594,75891,375150
MoleculeTotal
Length
All386,353
Mitochondrion MT221,853
Chloroplast Pltd152,860
Mitochondrial Plasmid linear plasmid11,640