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Source database (GenBank or RefSeq) File type

ASM2049712v1

Organism name:

Mauremys mutica (yellowpond turtle)

Infraspecific name:

Ecotype: Southern

Isolate:

MM-2020

Sex:

female

BioSample:

SAMN19136605

BioProject:

PRJNA729638

Submitter:

Institute of Zoology, Guangdong Academy of Science

Date:

2021/10/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_020497125.1 (latest)

RefSeq assembly accession:

GCF_020497125.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAHDVG01

Assembly method:

FALCON v. March-2021

Expected final version:

yes

Genome coverage:

99.81x

Sequencing technology:

PacBio

IDs: 11215631 [UID] 29568298 [GenBank] 29946588 [RefSeq]

See Genome Information for Mauremys mutica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020497125.1	≠	GCF_020497125.1	ASM2049712v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,484,367,879
Total ungapped length	2,390,893,795
Gaps between scaffolds	0
Number of scaffolds	595
Scaffold N50	135,065,811
Scaffold L50	6
Number of contigs	1,636
Contig N50	15,010,728
Contig L50	50
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	595

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM035633.1	=	NC_059072.1	0
Chromosome 2	CM035634.1	=	NC_059073.1	0
Chromosome 3	CM035635.1	=	NC_059074.1	0
Chromosome 4	CM035636.1	=	NC_059075.1	0
Chromosome 5	CM035637.1	=	NC_059076.1	0
Chromosome 6	CM035638.1	=	NC_059077.1	0
Chromosome 7	CM035639.1	=	NC_059078.1	0
Chromosome 8	CM035640.1	=	NC_059079.1	0
Chromosome 9	CM035641.1	=	NC_059080.1	0
Chromosome 10	CM035642.1	=	NC_059081.1	0
Chromosome 11	CM035643.1	=	NC_059082.1	0
Chromosome 12	CM035644.1	=	NC_059083.1	0
Chromosome 13	CM035645.1	=	NC_059084.1	0
Chromosome 14	CM035646.1	=	NC_059085.1	0
Chromosome 15	CM035647.1	=	NC_059086.1	0
Chromosome 16	CM035648.1	=	NC_059087.1	0
Chromosome 17	CM035649.1	=	NC_059088.1	0
Chromosome 18	CM035650.1	=	NC_059089.1	0
Chromosome 19	CM035651.1	=	NC_059090.1	0
Chromosome 20	CM035652.1	=	NC_059091.1	0
Chromosome 21	CM035653.1	=	NC_059092.1	0
Chromosome 22	CM035654.1	=	NC_059093.1	0
Chromosome 23	CM035655.1	=	NC_059094.1	0
Chromosome 24	CM035656.1	=	NC_059095.1	0
Chromosome 25	CM035657.1	=	NC_059096.1	0
Chromosome 26	CM035658.1	=	NC_059097.1	0
unplaced	n/a	n/a	n/a	568

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,484,351,270	594	2,390,877,186	135,065,811	1,041
Chromosome 1	375,114,972	1	372,229,221	375,114,972	81
Chromosome 2	300,048,998	1	298,876,614	300,048,998	63
Chromosome 3	212,287,728	1	212,072,522	212,287,728	32
Chromosome 4	164,363,298	1	160,069,026	164,363,298	66
Chromosome 5	145,648,673	1	144,837,937	145,648,673	29
Chromosome 6	135,065,811	1	133,475,707	135,065,811	34
Chromosome 7	129,870,119	1	129,280,993	129,870,119	16
Chromosome 8	112,858,392	1	112,613,962	112,858,392	27
Chromosome 9	106,458,794	1	106,295,363	106,458,794	24
Chromosome 10	89,363,023	1	82,178,428	89,363,023	27
Chromosome 11	86,617,258	1	86,400,838	86,617,258	10
Chromosome 12	83,389,883	1	73,137,199	83,389,883	95
Chromosome 13	60,021,753	1	55,452,484	60,021,753	52
Chromosome 14	46,874,551	1	44,991,222	46,874,551	13
Chromosome 15	39,073,946	1	28,101,578	39,073,946	32
Chromosome 16	33,684,874	1	33,516,459	33,684,874	9
Chromosome 17	29,929,458	1	26,242,283	29,929,458	19
Chromosome 18	29,614,513	1	28,659,026	29,614,513	15
Chromosome 19	27,138,976	1	25,883,866	27,138,976	10
Chromosome 20	27,129,099	1	25,018,809	27,129,099	44
Chromosome 21	25,374,012	1	24,783,286	25,374,012	11
Chromosome 22	24,120,119	1	23,840,557	24,120,119	20
Chromosome 23	21,700,170	1	21,089,150	21,700,170	10
Chromosome 24	18,930,342	1	17,828,600	18,930,342	5
Chromosome 25	17,190,318	1	17,176,539	17,190,318	4
Chromosome 26	16,588,402	1	10,298,694	16,588,402	58
unplaced	125,893,788	568	96,526,823	818,386	235

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ASM2049712v1

See Genome Information for Mauremys mutica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear