U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2073546v1

Organism name:
Collinsella stercoris DSM 13279 (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1572
BioSample:
SAMN22091669
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/11/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020735465.1 (latest)
RefSeq assembly accession:
GCF_020735465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
3903.00x
Sequencing technology:
Pacbio; Illumina

IDs: 11374581 [UID] 29943018 [GenBank] 29957198 [RefSeq]

See Genome Information for Collinsella stercoris

There are 15 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/22/2023 16:48:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,095
CDSs (total)::2,031
Genes (coding)::2,017
CDSs (with protein)::2,017
Genes (RNA)::64
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::1 of 14
Pseudo Genes (incomplete)::13 of 14
Pseudo Genes (internal stop)::2 of 14
Pseudo Genes (multiple problems)::2 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,460,750
Total ungapped length2,460,750
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020735475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP085935.1=NZ_CP085935.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,460,750

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Collinsella stercoris DSM 13279Collinsella stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025149625.1Collinsella stercorissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025149625.1Collinsella stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna