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ASM2073618v1

Organism name:
Campylobacter gracilis (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:19528
Infraspecific name:
Strain: FDAARGOS_1548
BioSample:
SAMN22091645
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/11/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020736185.1 (latest)
RefSeq assembly accession:
GCF_020736185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
2695.60x
Sequencing technology:
Pacbio; Illumina

IDs: 11374941 [UID] 29943878 [GenBank] 29958018 [RefSeq]

See Genome Information for Campylobacter gracilis

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/23/2023 19:32:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,242
CDSs (total)::2,188
Genes (coding)::2,144
CDSs (with protein)::2,144
Genes (RNA)::54
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::42
ncRNAs::3
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::6 of 44
Pseudo Genes (incomplete)::37 of 44
Pseudo Genes (internal stop)::4 of 44
Pseudo Genes (multiple problems)::2 of 44
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,281,730
Total ungapped length2,281,730
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020736195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP085963.1=NZ_CP085963.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,281,730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter gracilisCampylobacter gracilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001190745.1Campylobacter gracilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001190745.1Campylobacter gracilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9999.99
Best-match type99.9999.9999.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna