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ASM2092343v1

Organism name:
Brevibacillus humidisoli (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MMS20-4M-10-Y
BioSample:
SAMN23138538
BioProject:
PRJNA780345
Submitter:
Chungnam national university
Date:
2021/11/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020923435.1 (latest)
RefSeq assembly accession:
GCF_020923435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.8
Expected final version:
yes
Genome coverage:
61.47x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 11481071 [UID] 30230988 [GenBank] 30287158 [RefSeq]

See Genome Information for Brevibacillus humidisoli

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Seung Bum Kim

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_020923435.1-RS_2024_04_01
Annotation Date::04/01/2024 04:53:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,832
CDSs (total)::4,714
Genes (coding)::4,634
CDSs (with protein)::4,634
Genes (RNA)::118
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::89
ncRNAs::5
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::43 of 80
Pseudo Genes (incomplete)::40 of 80
Pseudo Genes (internal stop)::6 of 80
Pseudo Genes (multiple problems)::9 of 80
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,908,260
Total ungapped length4,908,260
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020923445.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP087263.1=NZ_CP087263.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,908,260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Brevibacillus humidisoliBrevibacillus humidisoli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003963515.1Brevibacillus marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.6815.8819.10

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected