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MPM_Stown_v2.3

Organism name:
Sphaerodactylus townsendi (lizards & snakes)
Isolate:
TG3544
Sex:
male
BioSample:
SAMN20179316
BioProject:
PRJNA746057
Submitter:
Marquette University
Date:
2022/04/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021028975.2 (latest)
RefSeq assembly accession:
GCF_021028975.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHVXK02
Assembly method:
SuperNova v. 2.1.1
Expected final version:
no
Genome coverage:
160.0x
Sequencing technology:
Illumina HiSeq

IDs: 12456181 [UID] 32617138 [GenBank] 33021618 [RefSeq]

See Genome Information for Sphaerodactylus townsendi

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,810,846,735
Total ungapped length1,810,617,606
Gaps between scaffolds0
Number of scaffolds1,742
Scaffold N50133,801,376
Scaffold L506
Number of contigs4,230
Contig N509,459,502
Contig L5044
Total number of chromosomes and plasmids17
Number of component sequences (WGS or clone)1,742

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021028985.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG01CM037614.2=NC_059425.10
Linkage Group LG02CM037615.2=NC_059426.10
Linkage Group LG03CM037616.2=NC_059427.10
Linkage Group LG04CM037617.2=NC_059428.10
Linkage Group LG05CM037618.2=NC_059429.10
Linkage Group LG06CM037619.2=NC_059430.10
Linkage Group LG07CM037620.2=NC_059431.10
Linkage Group LG08CM037621.2=NC_059432.10
Linkage Group LG09CM037622.2=NC_059433.10
Linkage Group LG10CM037623.2=NC_059434.10
Linkage Group LG11CM037624.2=NC_059435.10
Linkage Group LG12CM037625.2=NC_059436.10
Linkage Group LG13CM037626.2=NC_059437.10
Linkage Group LG14CM037627.2=NC_059438.10
Linkage Group LG15CM037628.2=NC_059439.10
Linkage Group LG16CM037629.2=NC_059440.10
Linkage Group LG17CM037630.2=NC_059441.10
unplacedn/an/an/a1,725

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,810,846,7351,7421,810,617,606133,801,3762,4880
Linkage Group LG01196,596,2891196,573,204196,596,2892500
Linkage Group LG02183,231,7541183,212,058183,231,7542140
Linkage Group LG03179,686,2421179,646,379179,686,2424340
Linkage Group LG04158,922,2551158,907,342158,922,2551620
Linkage Group LG05139,430,8311139,416,644139,430,8311540
Linkage Group LG06133,801,3761133,781,039133,801,3762210
Linkage Group LG07126,020,6051126,009,827126,020,6051170
Linkage Group LG08114,937,7491114,924,373114,937,7491430
Linkage Group LG0996,948,851196,940,13196,948,851950
Linkage Group LG1089,124,874189,116,96789,124,874860
Linkage Group LG1178,974,167178,966,20478,974,167860
Linkage Group LG1259,335,008159,329,41059,335,008610
Linkage Group LG1358,178,783158,172,11958,178,783720
Linkage Group LG1448,643,786148,638,38648,643,786590
Linkage Group LG1540,154,974140,140,49840,154,9741580
Linkage Group LG1633,736,504133,731,01733,736,504590
Linkage Group LG1728,331,578128,325,70428,331,578640
unplaced44,791,1091,72544,786,30455,075530