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Source database (GenBank or RefSeq) File type

OgorEven_v1.0

Organism name:

Oncorhynchus gorbuscha (pink salmon)

Infraspecific name:

Ecotype: Even-year

Isolate:

QuinsamMale2020

Sex:

male

BioSample:

SAMN18987060

BioProject:

PRJNA556728

Submitter:

Fisheries and Oceans Canada

Date:

2021/12/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021184085.1 (latest)

RefSeq assembly accession:

GCF_021184085.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGYUW01

Assembly method:

Flye v. 2.8.2-b1695; Racon v. 1.4.16; Pilon v. 1.24; Salsa2 v. April-2021; Chromonomer v. 1.10; Ragtag v. 1.0.1; Custom v. April-2021; Juicebox v. 1.11.08

Expected final version:

yes

Genome coverage:

44.0x

Sequencing technology:

Oxford Nanopore MinION; MGI; Illumina

IDs: 11614261 [UID] 30587678 [GenBank] 31133528 [RefSeq]

See Genome Information for Oncorhynchus gorbuscha

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021184085.1	≠	GCF_021184085.1	OgorEven_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,690,283,663
Total ungapped length	2,689,095,659
Gaps between scaffolds	0
Number of scaffolds	19,028
Scaffold N50	85,609,528
Scaffold L50	14
Number of contigs	24,240
Contig N50	1,451,475
Contig L50	385
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	22,556

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM037749.1	=	NC_060173.1	0
Linkage Group LG02	CM037750.1	=	NC_060174.1	0
Linkage Group LG03	CM037751.1	=	NC_060175.1	0
Linkage Group LG04	CM037752.1	=	NC_060176.1	0
Linkage Group LG05	CM037753.1	=	NC_060177.1	0
Linkage Group LG06	CM037754.1	=	NC_060178.1	0
Linkage Group LG07	CM037755.1	=	NC_060179.1	0
Linkage Group LG08	CM037756.1	=	NC_060180.1	0
Linkage Group LG09	CM037757.1	=	NC_060181.1	0
Linkage Group LG10	CM037758.1	=	NC_060182.1	0
Linkage Group LG11	CM037759.1	=	NC_060183.1	0
Linkage Group LG12	CM037760.1	=	NC_060184.1	0
Linkage Group LG13	CM037761.1	=	NC_060185.1	0
Linkage Group LG14	CM037762.1	=	NC_060186.1	0
Linkage Group LG15	CM037763.1	=	NC_060187.1	0
Linkage Group LG16	CM037764.1	=	NC_060188.1	0
Linkage Group LG17	CM037765.1	=	NC_060189.1	0
Linkage Group LG18	CM037766.1	=	NC_060190.1	0
Linkage Group LG19	CM037767.1	=	NC_060191.1	0
Linkage Group LG20	CM037768.1	=	NC_060192.1	0
Linkage Group LG21	CM037769.1	=	NC_060193.1	0
Linkage Group LG22	CM037770.1	=	NC_060194.1	0
Linkage Group LG23	CM037771.1	=	NC_060195.1	0
Linkage Group LG24	CM037772.1	=	NC_060196.1	0
Linkage Group LG25	CM037773.1	=	NC_060197.1	0
Linkage Group LG26	CM037774.1	=	NC_060198.1	0
Linkage Group LGY	CM037748.1	=	NC_060199.1	0
unplaced	n/a	n/a	n/a	19,000

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,690,266,878	19,027	2,689,078,874	85,609,528	5,212
Linkage Group LG01	121,242,117	1	121,201,017	121,242,117	203
Linkage Group LG02	112,602,575	1	112,563,975	112,602,575	190
Linkage Group LG03	109,001,000	1	108,962,800	109,001,000	190
Linkage Group LG04	86,901,846	1	86,867,746	86,901,846	161
Linkage Group LG05	97,899,794	1	97,852,534	97,899,794	289
Linkage Group LG06	107,529,014	1	107,492,514	107,529,014	213
Linkage Group LG07	89,516,582	1	89,476,172	89,516,582	181
Linkage Group LG08	79,710,677	1	79,677,977	79,710,677	155
Linkage Group LG09	100,203,093	1	100,152,593	100,203,093	261
Linkage Group LG10	101,020,560	1	100,977,460	101,020,560	227
Linkage Group LG11	88,157,483	1	88,118,983	88,157,483	189
Linkage Group LG12	86,172,198	1	86,134,498	86,172,198	193
Linkage Group LG13	102,694,786	1	102,652,286	102,694,786	237
Linkage Group LG14	84,819,153	1	84,769,743	84,819,153	271
Linkage Group LG15	85,609,528	1	85,583,928	85,609,528	116
Linkage Group LG16	100,482,852	1	100,433,452	100,482,852	230
Linkage Group LG17	59,070,424	1	59,050,924	59,070,424	79
Linkage Group LG18	83,923,786	1	83,870,486	83,923,786	241
Linkage Group LG19	80,794,599	1	80,763,999	80,794,599	138
Linkage Group LG20	45,742,288	1	45,719,488	45,742,288	112
Linkage Group LG21	60,884,844	1	60,859,020	60,884,844	132
Linkage Group LG22	52,623,370	1	52,599,170	52,623,370	130
Linkage Group LG23	72,202,100	1	72,162,600	72,202,100	203
Linkage Group LG24	66,433,064	1	66,402,964	66,433,064	121
Linkage Group LG25	51,769,365	1	51,744,565	51,769,365	144
Linkage Group LG26	44,229,230	1	44,206,130	44,229,230	99
Linkage Group LGY	3,279,969	1	3,278,369	3,279,969	8
unplaced	515,750,581	19,000	515,503,481	89,809	499

Assembly

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OgorEven_v1.0

See Genome Information for Oncorhynchus gorbuscha

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear