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Source database (GenBank or RefSeq) File type

ASM2128878v3

Organism name:

Mirounga angustirostris (Northern elephant seal)

Isolate:

JK_09032017

BioSample:

SAMN13072016

BioProject:

PRJNA512907

Submitter:

DNA Zoo

Date:

2022/12/21

Release type:

Minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_021288785.3 (latest)

RefSeq assembly accession:

GCF_021288785.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

JAJSZF01

Assembly method:

3D-DNA v. 2019; JBAT v. 2019

Expected final version:

yes

Genome coverage:

125.0x

Sequencing technology:

Illumina NovaSeq 6000

IDs: 15028131 [UID] 38795888 [GenBank] 41494438 [RefSeq]

See Genome Information for Mirounga angustirostris

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021288785.3	=	GCF_021288785.2	ASM2128878v3	Chromosome	Latest GenBank, RefSeq suppressed
GCA_021288785.2	=	GCF_021288785.1	ASM2128878v2	Scaffold	Replaced GenBank, RefSeq suppressed
GCA_021288785.1	n/a	n/a	ASM2128878v1	Scaffold	Replaced GenBank

Comment

In January 2022 47 sequences were suppressed because they were found to be contaminants

Global statistics

Total sequence length	2,366,166,981
Total ungapped length	2,350,871,381
Gaps between scaffolds	0
Number of scaffolds	142,455
Scaffold N50	139,676,048
Scaffold L50	7
Number of contigs	182,391
Contig N50	76,189
Contig L50	8,920
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	142,455

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM049323.1	=	NC_072356.1	0
Chromosome 2	CM049324.1	=	NC_072357.1	0
Chromosome 3	CM049325.1	=	NC_072358.1	0
Chromosome 4	CM049326.1	=	NC_072359.1	0
Chromosome 5	CM049327.1	=	NC_072360.1	0
Chromosome 6	CM049328.1	=	NC_072361.1	0
Chromosome 7	CM049329.1	=	NC_072362.1	0
Chromosome 8	CM049330.1	=	NC_072363.1	0
Chromosome 9	CM049331.1	=	NC_072364.1	0
Chromosome 10	CM049332.1	=	NC_072365.1	0
Chromosome 11	CM049333.1	=	NC_072366.1	0
Chromosome 12	CM049334.1	=	NC_072367.1	0
Chromosome 13	CM049335.1	=	NC_072368.1	0
Chromosome 14	CM049336.1	=	NC_072369.1	0
Chromosome 15	CM049337.1	=	NC_072370.1	0
Chromosome 16	CM049338.1	=	NC_072371.1	0
Chromosome 17	CM049339.1	=	NC_072372.1	0
unplaced	n/a	n/a	n/a	142,438

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,366,166,981	142,455	2,350,871,381	139,676,048	39,936
Chromosome 1	111,871,330	1	110,879,330	111,871,330	2,480
Chromosome 2	139,676,048	1	138,738,648	139,676,048	2,462
Chromosome 3	165,725,162	1	164,691,062	165,725,162	2,709
Chromosome 4	144,390,866	1	143,424,466	144,390,866	2,480
Chromosome 5	188,018,163	1	186,616,463	188,018,163	3,625
Chromosome 6	85,452,374	1	84,768,774	85,452,374	1,732
Chromosome 7	128,908,406	1	128,022,806	128,908,406	2,260
Chromosome 8	85,554,644	1	85,035,444	85,554,644	1,380
Chromosome 9	54,920,518	1	54,530,118	54,920,518	1,048
Chromosome 10	53,450,042	1	53,068,442	53,450,042	1,000
Chromosome 11	101,211,745	1	100,454,245	101,211,745	1,963
Chromosome 12	177,454,113	1	176,318,813	177,454,113	2,973
Chromosome 13	132,296,729	1	131,365,129	132,296,729	2,388
Chromosome 14	199,562,000	1	198,172,500	199,562,000	3,563
Chromosome 15	97,986,527	1	97,273,927	97,986,527	1,810
Chromosome 16	135,623,083	1	134,712,883	135,623,083	2,298
Chromosome 17	182,503,797	1	181,312,097	182,503,797	3,037
unplaced	181,561,434	142,438	181,486,234	8,045	728

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ASM2128878v3

See Genome Information for Mirounga angustirostris

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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