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ASM2155478v1

Organism name:
Planktothrix agardhii 1807 (cyanobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1807
BioSample:
SAMN22224945
BioProject:
PRJNA770612
Submitter:
Bowling Green State University
Date:
2022/01/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_021554785.1 (latest)
RefSeq assembly accession:
GCF_021554785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKGOR01
Assembly method:
CLC NGS Cell v. 12.0.2
Expected final version:
yes
Reference guided assembly:
GCA_000710505.1
Genome coverage:
900x
Sequencing technology:
Illumina NovaSeq

IDs: 11801241 [UID] 31067328 [GenBank] 31120668 [RefSeq]

See Genome Information for Planktothrix agardhii

There are 47 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/18/2022 17:17:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,867
CDSs (total)::4,817
Genes (coding)::4,708
CDSs (with protein)::4,708
Genes (RNA)::50
rRNAs::3, 4 (5S, 23S)
complete rRNAs::3, 4 (5S, 23S)
tRNAs::39
ncRNAs::4
Pseudo Genes (total)::109
CDSs (without protein)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::27 of 109
Pseudo Genes (incomplete)::89 of 109
Pseudo Genes (internal stop)::7 of 109
Pseudo Genes (multiple problems)::13 of 109
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,429,063
Total ungapped length5,429,063
Number of contigs72
Contig N504,511,164
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)72

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,429,063725,429,0634,511,16400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Planktothrix agardhii 1807Planktothrix agardhii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003609755.1Planktothrix agardhii NIES-204type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003609755.1Planktothrix agardhiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1883.5289.19
Best-match type99.1883.5289.19

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna