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Source database (GenBank or RefSeq) File type

ASM2253959v1

Organism name:

Amphiprion ocellaris (clown anemonefish)

Infraspecific name:

Ecotype: Okinawa

Isolate:

individual 3

Sex:

male

BioSample:

SAMN23798798

BioProject:

PRJNA787397

Submitter:

Okinawa Institute of Science and Technology

Date:

2022/03/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022539595.1 (latest)

RefSeq assembly accession:

GCF_022539595.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJUWX01

Assembly method:

Falcon_Proximo v. OCT-2020

Expected final version:

yes

Genome coverage:

104.0x

Sequencing technology:

PacBio Sequel

IDs: 12304331 [UID] 32224078 [GenBank] 41761928 [RefSeq]

See Genome Information for Amphiprion ocellaris

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022539595.1	≠	GCF_022539595.1	ASM2253959v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	863,484,803
Total ungapped length	863,348,162
Gaps between scaffolds	0
Number of scaffolds	354
Scaffold N50	36,880,113
Scaffold L50	11
Number of contigs	1,808
Contig N50	812,338
Contig L50	319
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	354

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM040061.1	=	NC_072766.1	0
Chromosome 2	CM040062.1	=	NC_072767.1	0
Chromosome 3	CM040063.1	=	NC_072768.1	0
Chromosome 4	CM040064.1	=	NC_072769.1	0
Chromosome 5	CM040065.1	=	NC_072770.1	0
Chromosome 6	CM040066.1	=	NC_072771.1	0
Chromosome 7	CM040067.1	=	NC_072772.1	0
Chromosome 8	CM040068.1	=	NC_072773.1	0
Chromosome 9	CM040069.1	=	NC_072774.1	0
Chromosome 10	CM040070.1	=	NC_072775.1	0
Chromosome 11	CM040071.1	=	NC_072776.1	0
Chromosome 12	CM040072.1	=	NC_072777.1	0
Chromosome 13	CM040073.1	=	NC_072778.1	0
Chromosome 14	CM040074.1	=	NC_072779.1	0
Chromosome 15	CM040075.1	=	NC_072780.1	0
Chromosome 16	CM040076.1	=	NC_072781.1	0
Chromosome 17	CM040077.1	=	NC_072782.1	0
Chromosome 18	CM040078.1	=	NC_072783.1	0
Chromosome 19	CM040079.1	=	NC_072784.1	0
Chromosome 20	CM040080.1	=	NC_072785.1	0
Chromosome 21	CM040081.1	=	NC_072786.1	0
Chromosome 22	CM040082.1	=	NC_072787.1	0
Chromosome 23	CM040083.1	=	NC_072788.1	0
Chromosome 24	CM040084.1	=	NC_072789.1	0
unplaced	n/a	n/a	n/a	329

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	863,468,154	353	863,331,513	36,880,113	1,454
Chromosome 1	43,941,765	1	43,935,272	43,941,765	73
Chromosome 2	41,817,216	1	41,810,532	41,817,216	78
Chromosome 3	41,245,747	1	41,237,289	41,245,747	87
Chromosome 4	40,945,270	1	40,938,592	40,945,270	69
Chromosome 5	40,228,147	1	40,220,228	40,228,147	75
Chromosome 6	39,296,448	1	39,291,553	39,296,448	57
Chromosome 7	39,040,519	1	39,033,982	39,040,519	82
Chromosome 8	37,997,308	1	37,990,437	37,997,308	65
Chromosome 9	37,870,855	1	37,865,352	37,870,855	56
Chromosome 10	37,359,734	1	37,353,445	37,359,734	70
Chromosome 11	36,880,113	1	36,872,274	36,880,113	70
Chromosome 12	36,781,507	1	36,776,905	36,781,507	61
Chromosome 13	36,729,457	1	36,724,699	36,729,457	53
Chromosome 14	35,748,053	1	35,742,511	35,748,053	47
Chromosome 15	35,341,550	1	35,335,002	35,341,550	52
Chromosome 16	34,610,460	1	34,604,733	34,610,460	62
Chromosome 17	33,922,019	1	33,917,719	33,922,019	50
Chromosome 18	33,559,439	1	33,553,320	33,559,439	70
Chromosome 19	33,474,982	1	33,469,613	33,474,982	61
Chromosome 20	33,245,535	1	33,241,147	33,245,535	51
Chromosome 21	29,263,592	1	29,260,313	29,263,592	45
Chromosome 22	28,864,005	1	28,860,073	28,864,005	39
Chromosome 23	26,460,589	1	26,456,455	26,460,589	41
Chromosome 24	21,987,767	1	21,983,990	21,987,767	40
unplaced	6,856,077	329	6,856,077	32,759	0

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ASM2253959v1

See Genome Information for Amphiprion ocellaris

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear