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HLdesRot8A

Organism name:
Desmodus rotundus (common vampire bat)
Isolate:
HL8
Sex:
male
BioSample:
SAMN24116476
BioProject:
PRJNA789528
Submitter:
Bat1K
Date:
2022/03/24
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022682495.1 (replaced)
RefSeq assembly accession:
GCF_022682495.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAKFFZ01
Assembly method:
HiFiasm v. 0.15.1-r331; Salsa2 v. 2.2; BWA-MEM v. 0.7.17-r1188; pbmm2 v. 1.3.0; gcpp v. 2.0.2; DeepVariant v. 1.1.0
Expected final version:
yes
Genome coverage:
32x
Sequencing technology:
PacBio Sequel; Illumina NovaSeq
Linked assembly:
GCA_022682395.1 (alternate pseudohaplotype of diploid)

IDs: 12382331 [UID] 32425538 [GenBank] 41093478 [RefSeq]

See Genome Information for Desmodus rotundus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,113,489,943
Total ungapped length2,113,234,880
Gaps between scaffolds0
Number of scaffolds573
Scaffold N50160,127,860
Scaffold L506
Number of contigs1,184
Contig N506,762,714
Contig L5086
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)573

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_022683505.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM040288.1=NC_071387.10
Chromosome 2CM040289.1=NC_071388.10
Chromosome 3CM040290.1=NC_071389.10
Chromosome 4CM040291.1=NC_071390.10
Chromosome 5CM040292.1=NC_071391.10
Chromosome 6CM040293.1=NC_071392.10
Chromosome 7CM040294.1=NC_071393.10
Chromosome 8CM040295.1=NC_071394.10
Chromosome 9CM040296.1=NC_071395.10
Chromosome 10CM040297.1=NC_071396.10
Chromosome 11CM040298.1=NC_071397.10
Chromosome 12CM040299.1=NC_071398.10
Chromosome 13CM040300.1=NC_071399.10
Chromosome XCM040301.1=NC_071400.10
unplacedn/an/an/a558

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,113,473,2845722,113,218,221160,127,8606110
Chromosome 1212,258,1611212,234,841212,258,161560
Chromosome 2209,359,4141209,341,314209,359,414440
Chromosome 3202,130,1481202,104,788202,130,148580
Chromosome 4181,626,5751181,607,994181,626,575460
Chromosome 5167,477,8011167,460,381167,477,801390
Chromosome 6160,127,8601160,111,739160,127,860390
Chromosome 7137,417,5821137,399,722137,417,582430
Chromosome 8135,455,8781135,443,518135,455,878320
Chromosome 9113,953,8361113,922,476113,953,836700
Chromosome 10113,614,2891113,603,869113,614,289250
Chromosome 11103,297,1431103,288,523103,297,143240
Chromosome 12101,878,0741101,849,853101,878,074710
Chromosome 1394,777,251194,772,53194,777,251110
Chromosome X101,544,6221101,529,022101,544,622390
unplaced78,554,65055878,547,650321,893140
MoleculeTotal
Length
Mitochondrion MT16,659