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Source database (GenBank or RefSeq) File type

IGBB_LRoh.1.0

Organism name:

Labeo rohita (rohu)

Infraspecific name:

Strain: BAU-BD-2019

Sex:

male

BioSample:

SAMN15716776

BioProject:

PRJNA650519

Submitter:

Mississippi State University

Date:

2022/04/19

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022985175.1 (latest)

RefSeq assembly accession:

GCF_022985175.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JACTAM01

Assembly method:

wtdbg2 v. 2.4; racon v. 1.4.0; pilon v. 1.23; Solve v. 3.4.1; SALSA v. 2.3; ragtag v. 1.1.1

Expected final version:

yes

Genome coverage:

390.0x

Sequencing technology:

Oxford Nanopore GridION; Illumina HiSeq

IDs: 12563281 [UID] 32852338 [GenBank] 36556898 [RefSeq]

See Genome Information for Labeo rohita

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022985175.1	≠	GCF_022985175.1	IGBB_LRoh.1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Changed strain designation from 'RAU-DB-2019' to 'BAU-BD-2019' (SEP-2022).

Global statistics

Total sequence length	1,126,558,565
Total ungapped length	945,511,340
Gaps between scaffolds	0
Number of scaffolds	2,870
Scaffold N50	37,901,974
Scaffold L50	12
Number of contigs	8,014
Contig N50	1,265,157
Contig L50	209
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	2,870

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM040936.1	=	NC_066869.1	0
Chromosome 2	CM040937.1	=	NC_066870.1	0
Chromosome 3	CM040938.1	=	NC_066871.1	0
Chromosome 4	CM040939.1	=	NC_066872.1	0
Chromosome 5	CM040940.1	=	NC_066873.1	0
Chromosome 6	CM040941.1	=	NC_066874.1	0
Chromosome 7	CM040942.1	=	NC_066875.1	0
Chromosome 8	CM040943.1	=	NC_066876.1	0
Chromosome 9	CM040944.1	=	NC_066877.1	0
Chromosome 10	CM040945.1	=	NC_066878.1	0
Chromosome 11	CM040946.1	=	NC_066879.1	0
Chromosome 12	CM040947.1	=	NC_066880.1	0
Chromosome 13	CM040948.1	=	NC_066881.1	0
Chromosome 14	CM040949.1	=	NC_066882.1	0
Chromosome 15	CM040950.1	=	NC_066883.1	0
Chromosome 16	CM040951.1	=	NC_066884.1	0
Chromosome 17	CM040952.1	=	NC_066885.1	0
Chromosome 18	CM040953.1	=	NC_066886.1	0
Chromosome 19	CM040954.1	=	NC_066887.1	0
Chromosome 20	CM040955.1	=	NC_066888.1	0
Chromosome 21	CM040956.1	=	NC_066889.1	0
Chromosome 22	CM040957.1	=	NC_066890.1	0
Chromosome 23	CM040958.1	=	NC_066891.1	0
Chromosome 24	CM040959.1	=	NC_066892.1	0
Chromosome 25	CM040960.1	=	NC_066893.1	0
unplaced	n/a	n/a	n/a	2,844

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,126,541,939	2,869	945,494,714	37,901,974	5,144
Chromosome 1	50,360,987	1	36,055,550	50,360,987	296
Chromosome 2	39,672,848	1	35,145,163	39,672,848	120
Chromosome 3	57,349,520	1	38,689,029	57,349,520	423
Chromosome 4	46,442,965	1	27,171,677	46,442,965	433
Chromosome 5	46,981,267	1	44,523,576	46,981,267	85
Chromosome 6	35,609,041	1	34,234,859	35,609,041	37
Chromosome 7	60,688,308	1	45,291,686	60,688,308	338
Chromosome 8	37,901,974	1	35,907,037	37,901,974	80
Chromosome 9	42,740,749	1	37,792,907	42,740,749	141
Chromosome 10	31,249,687	1	29,861,902	31,249,687	57
Chromosome 11	28,570,014	1	27,572,715	28,570,014	35
Chromosome 12	31,394,111	1	29,623,898	31,394,111	57
Chromosome 13	36,609,346	1	35,674,373	36,609,346	46
Chromosome 14	33,426,740	1	31,586,574	33,426,740	56
Chromosome 15	38,858,801	1	31,248,457	38,858,801	156
Chromosome 16	39,433,035	1	37,012,335	39,433,035	104
Chromosome 17	35,622,047	1	34,258,380	35,622,047	59
Chromosome 18	35,139,235	1	32,492,576	35,139,235	83
Chromosome 19	39,778,521	1	34,155,839	39,778,521	137
Chromosome 20	33,901,507	1	32,504,485	33,901,507	60
Chromosome 21	30,796,421	1	28,878,550	30,796,421	57
Chromosome 22	66,722,287	1	28,788,541	66,722,287	713
Chromosome 23	31,868,216	1	29,637,442	31,868,216	80
Chromosome 24	30,502,187	1	27,953,973	30,502,187	74
Chromosome 25	31,063,477	1	27,451,386	31,063,477	105
unplaced	133,858,648	2,844	111,981,804	105,105	1,312

Assembly

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IGBB_LRoh.1.0

See Genome Information for Labeo rohita

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear