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ASM2337392v1

Organism name:
Fibrobacter succinogenes (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: HC4
BioSample:
SAMN26377323
BioProject:
PRJNA812370
Submitter:
Institut Agro Dijon
Date:
2022/05/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_023373925.1 (latest)
RefSeq assembly accession:
GCF_023373925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JALCZV01
Assembly method:
SPAdes v. 3.10.0
Expected final version:
yes
Genome coverage:
520x
Sequencing technology:
Illumina NovaSeq

IDs: 12725161 [UID] 33282098 [GenBank] 33421918 [RefSeq]

See Genome Information for Fibrobacter succinogenes

Pathogen Detection Resources

There are 49 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from DSM 33656

Global statistics

Total sequence length3,748,246
Total ungapped length3,747,089
Gaps between scaffolds0
Number of scaffolds50
Scaffold N50149,151
Scaffold L509
Number of contigs62
Contig N50112,487
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,748,246503,747,089149,151120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fibrobacter succinogenesFibrobacter succinogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000024665.1Fibrobacter succinogenes subsp. succinogenes S85type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002797675.1Hallerella succinigenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.617.257.07
Best-match type84.103.263.91

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena