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ASM2371406v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MER 89
BioSample:
SAMN27921990
BioProject:
PRJNA832800
Submitter:
Jet Propulsion Laboratory
Date:
2022/06/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_023714065.1 (latest)
RefSeq assembly accession:
GCF_023714065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAMAUY01
Assembly method:
CLC NGS Cell v. JAN-2022
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq

IDs: 12963031 [UID] 33853278 [GenBank] 33865998 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1045 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/07/2022 05:59:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,223
CDSs (total)::4,103
Genes (coding)::4,014
CDSs (with protein)::4,014
Genes (RNA)::120
rRNAs::12, 10, 8 (5S, 16S, 23S)
complete rRNAs::5, 1 (5S, 16S)
partial rRNAs::7, 9, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::5
Pseudo Genes (total)::89
CDSs (without protein)::89
Pseudo Genes (ambiguous residues)::0 of 89
Pseudo Genes (frameshifted)::51 of 89
Pseudo Genes (incomplete)::44 of 89
Pseudo Genes (internal stop)::17 of 89
Pseudo Genes (multiple problems)::20 of 89
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,048,426
Total ungapped length4,048,426
Number of contigs73
Contig N50323,094
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)73

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,048,426734,048,426323,09400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3994.6190.86
Best-match type98.3994.6190.86

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna