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ASM2557952v2

Organism name:
Klebsiella variicola (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2022CK-00503
BioSample:
SAMN31152642
BioProject:
PRJNA288601
Submitter:
Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion
Date:
2022/12/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_025579525.2 (latest)
RefSeq assembly accession:
GCF_025579525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.5.0
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
Oxford Nanopore GridION; Illumina MiSeq

IDs: 15210971 [UID] 39183118 [GenBank] 39184698 [RefSeq]

See Genome Information for Klebsiella variicola

There are 1747 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/18/2024 04:50:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,845
CDSs (total)::5,720
Genes (coding)::5,560
CDSs (with protein)::5,560
Genes (RNA)::125
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::14
Pseudo Genes (total)::160
CDSs (without protein)::160
Pseudo Genes (ambiguous residues)::0 of 160
Pseudo Genes (frameshifted)::59 of 160
Pseudo Genes (incomplete)::98 of 160
Pseudo Genes (internal stop)::37 of 160
Pseudo Genes (multiple problems)::29 of 160
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,965,440
Total ungapped length5,965,440
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_025579535.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP114324.1=NZ_CP114324.1
Plasmid unnamed1CP114325.1=NZ_CP114325.1
Plasmid unnamed2CP114326.1=NZ_CP114326.1
Plasmid unnamed3CP114327.1=NZ_CP114327.1

Assembly statistics

MoleculeTotal
Length
All5,965,440
Chromosome 5,567,341
Plasmid unnamed1236,560
Plasmid unnamed2157,867
Plasmid unnamed33,672

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella variicolaKlebsiella variicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000828055.2Klebsiella variicolatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000828055.2Klebsiella variicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1285.9092.81
Best-match type99.1285.9092.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna