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Source database (GenBank or RefSeq) File type

ASM2569854v1

Organism name:

Gossypium raimondii (Peruvian cotton)

Isolate:

GPD5lz

BioSample:

SAMN30903775

BioProject:

PRJNA788082

Submitter:

Huazhong Agricultural University

Date:

2022/10/17

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_025698545.1 (latest)

RefSeq assembly accession:

GCF_025698545.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

JAOWAE01

Assembly method:

Canu v. 1.3

Expected final version:

yes

Genome coverage:

167.0x

Sequencing technology:

Oxford Nanopore; Illumina

IDs: 14146151 [UID] 36745178 [GenBank] 38031528 [RefSeq]

See Genome Information for Gossypium raimondii

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_025698545.1	≠	GCF_025698545.1	ASM2569854v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	751,041,726
Total ungapped length	751,033,826
Gaps between scaffolds	0
Number of scaffolds	289
Scaffold N50	57,716,579
Scaffold L50	7
Number of contigs	368
Contig N50	17,043,680
Contig L50	16
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	289

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM046969.1	=	NC_068565.1	0
Chromosome 2	CM046970.1	=	NC_068566.1	0
Chromosome 3	CM046971.1	=	NC_068567.1	0
Chromosome 4	CM046972.1	=	NC_068568.1	0
Chromosome 5	CM046973.1	=	NC_068569.1	0
Chromosome 6	CM046974.1	=	NC_068570.1	0
Chromosome 7	CM046975.1	=	NC_068571.1	0
Chromosome 8	CM046976.1	=	NC_068572.1	0
Chromosome 9	CM046977.1	=	NC_068573.1	0
Chromosome 10	CM046978.1	=	NC_068574.1	0
Chromosome 11	CM046979.1	=	NC_068575.1	0
Chromosome 12	CM046980.1	=	NC_068576.1	0
Chromosome 13	CM046981.1	=	NC_068577.1	0
unplaced	n/a	n/a	n/a	274

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	KU317325.1	=	NC_029998.1
Chloroplast Pltd	HQ325744.1	=	NC_016668.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	750,205,487	287	750,197,587	57,716,579	79
Chromosome 1	52,419,743	1	52,418,843	52,419,743	9
Chromosome 2	48,270,500	1	48,269,700	48,270,500	8
Chromosome 3	63,015,395	1	63,014,295	63,015,395	11
Chromosome 4	50,649,191	1	50,648,991	50,649,191	2
Chromosome 5	57,139,304	1	57,138,704	57,139,304	6
Chromosome 6	60,402,689	1	60,401,989	60,402,689	7
Chromosome 7	53,500,551	1	53,500,051	53,500,551	5
Chromosome 8	62,607,338	1	62,606,838	62,607,338	5
Chromosome 9	49,929,625	1	49,929,125	49,929,625	5
Chromosome 10	61,935,901	1	61,935,501	61,935,901	4
Chromosome 11	63,188,200	1	63,187,500	63,188,200	7
Chromosome 12	57,716,579	1	57,716,279	57,716,579	3
Chromosome 13	58,750,896	1	58,750,196	58,750,896	7
unplaced	10,679,575	274	10,679,575	72,153	0

Molecule	Total Length
All	836,239
Mitochondrion MT	676,078
Chloroplast Pltd	160,161

Assembly

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ASM2569854v1

See Genome Information for Gossypium raimondii

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Global assembly definition

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Assembly Unit Name
Primary Assembly
non-nuclear