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Source database (GenBank or RefSeq) File type

NIFS_Gcha_1.0

Organism name:

Gadus chalcogrammus (walleye pollock)

Isolate:

NIFS_2021

Sex:

female

BioSample:

SAMN19652023

BioProject:

PRJNA736536

Submitter:

National Institute of Fisheries Science

Date:

2022/11/18

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_026213295.1 (latest)

RefSeq assembly accession:

GCF_026213295.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAHRIL01

Assembly method:

FALCON-Unzip v. 1.2.5

Expected final version:

yes

Genome coverage:

61.77x

Sequencing technology:

Illumina NovaSeq

IDs: 14441101 [UID] 37466068 [GenBank] 42844328 [RefSeq]

See Genome Information for Gadus chalcogrammus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_026213295.1	≠	GCF_026213295.1	NIFS_Gcha_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	629,936,721
Total ungapped length	629,655,121
Gaps between scaffolds	0
Number of scaffolds	168
Scaffold N50	27,035,343
Scaffold L50	11
Number of contigs	2,984
Contig N50	358,862
Contig L50	508
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	168

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM047818.1	=	NC_079412.1	0
Chromosome 2	CM047819.1	=	NC_079413.1	0
Chromosome 3	CM047820.1	=	NC_079414.1	0
Chromosome 4	CM047821.1	=	NC_079415.1	0
Chromosome 5	CM047822.1	=	NC_079416.1	0
Chromosome 6	CM047823.1	=	NC_079417.1	0
Chromosome 7	CM047824.1	=	NC_079418.1	0
Chromosome 8	CM047825.1	=	NC_079419.1	0
Chromosome 9	CM047826.1	=	NC_079420.1	0
Chromosome 10	CM047827.1	=	NC_079421.1	0
Chromosome 11	CM047828.1	=	NC_079422.1	0
Chromosome 12	CM047829.1	=	NC_079423.1	0
Chromosome 13	CM047830.1	=	NC_079424.1	0
Chromosome 14	CM047831.1	=	NC_079425.1	0
Chromosome 15	CM047832.1	=	NC_079426.1	0
Chromosome 16	CM047833.1	=	NC_079427.1	0
Chromosome 17	CM047834.1	=	NC_079428.1	0
Chromosome 18	CM047835.1	=	NC_079429.1	0
Chromosome 19	CM047836.1	=	NC_079430.1	0
Chromosome 20	CM047837.1	=	NC_079431.1	0
Chromosome 21	CM047838.1	=	NC_079432.1	0
Chromosome 22	CM047839.1	=	NC_079433.1	0
Chromosome 23	CM047840.1	=	NC_079434.1	0
unplaced	n/a	n/a	n/a	144

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	629,920,150	167	629,638,550	27,035,343	2,816
Chromosome 1	28,941,121	1	28,927,821	28,941,121	133
Chromosome 2	24,940,092	1	24,928,592	24,940,092	115
Chromosome 3	28,562,481	1	28,551,381	28,562,481	111
Chromosome 4	36,743,719	1	36,726,419	36,743,719	173
Chromosome 5	24,472,987	1	24,462,787	24,472,987	102
Chromosome 6	27,035,343	1	27,026,743	27,035,343	86
Chromosome 7	33,599,105	1	33,586,305	33,599,105	128
Chromosome 8	29,011,401	1	28,999,401	29,011,401	120
Chromosome 9	26,491,001	1	26,480,301	26,491,001	107
Chromosome 10	23,238,034	1	23,226,834	23,238,034	112
Chromosome 11	27,968,553	1	27,956,953	27,968,553	116
Chromosome 12	33,218,860	1	33,192,160	33,218,860	267
Chromosome 13	26,025,845	1	26,013,145	26,025,845	127
Chromosome 14	28,938,321	1	28,927,121	28,938,321	112
Chromosome 15	28,687,451	1	28,676,651	28,687,451	108
Chromosome 16	36,758,684	1	36,745,584	36,758,684	131
Chromosome 17	18,047,467	1	18,036,567	18,047,467	109
Chromosome 18	22,743,564	1	22,733,164	22,743,564	104
Chromosome 19	19,485,829	1	19,477,429	19,485,829	84
Chromosome 20	23,999,676	1	23,989,976	23,999,676	97
Chromosome 21	20,780,111	1	20,768,811	20,780,111	113
Chromosome 22	21,007,954	1	20,996,054	21,007,954	119
Chromosome 23	21,528,788	1	21,517,688	21,528,788	111
unplaced	17,693,763	144	17,690,663	217,045	31

Assembly

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NIFS_Gcha_1.0

See Genome Information for Gadus chalcogrammus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear