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ASM2678738v1

Organism name:
Bacillus altitudinis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL BD-180
BioSample:
SAMN25843181
BioProject:
PRJNA802201
Submitter:
USDA-ARS-NCAUR
Date:
2022/12/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_026787385.1 (latest)
RefSeq assembly accession:
GCF_026787385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKRPO01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
44.09215487388108x
Sequencing technology:
Illumina NovaSeq

IDs: 14779181 [UID] 38252548 [GenBank] 38402088 [RefSeq]

See Genome Information for Bacillus altitudinis

There are 221 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/15/2022 17:24:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,933
CDSs (total)::3,855
Genes (coding)::3,782
CDSs (with protein)::3,782
Genes (RNA)::78
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (5S, 16S)
tRNAs::68
ncRNAs::5
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::36 of 73
Pseudo Genes (incomplete)::28 of 73
Pseudo Genes (internal stop)::14 of 73
Pseudo Genes (multiple problems)::4 of 73
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,695,084
Total ungapped length3,690,806
Gaps between scaffolds0
Number of scaffolds186
Scaffold N5036,549
Scaffold L5030
Number of contigs252
Contig N5026,694
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)186

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,695,0841863,690,80636,549660

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus altitudinisBacillus altitudinis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000691145.1Bacillus altitudinis 41KF2bsuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000691145.1Bacillus altitudinissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4493.3693.67
Best-match type98.4493.3693.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna