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Source database (GenBank or RefSeq) File type

ASM2687515v2

Organism name:

Cherax quadricarinatus (Australian red claw crayfish)

Isolate:

HC-2022

Sex:

male

BioSample:

SAMN31875550

BioProject:

PRJNA905544

Submitter:

Zhejiang Academy of Agricultural Sciences

Date:

2022/12/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_026875155.2 (latest)

RefSeq assembly accession:

GCF_026875155.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAPQEV01

Assembly method:

wtdbg2 v. 2.0

Expected final version:

yes

Genome coverage:

108.71x

Sequencing technology:

Illumina HiSeq; PacBio Sequel

IDs: 15257111 [UID] 39314838 [GenBank] 39506728 [RefSeq]

See Genome Information for Cherax quadricarinatus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_026875155.2	≠	GCF_026875155.1	ASM2687515v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_026875155.1	n/a	n/a	ASM2687515v1	Chromosome	Replaced GenBank

Comment

In January 2023 324 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	5,247,620,940
Total ungapped length	5,221,085,828
Gaps between scaffolds	0
Number of scaffolds	46,553
Scaffold N50	45,061,517
Scaffold L50	37
Number of contigs	99,626
Contig N50	146,379
Contig L50	8,319
Total number of chromosomes and plasmids	101
Number of component sequences (WGS or clone)	46,553

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM049195.1	=	NC_069399.1	0
Chromosome 2	CM049196.1	=	NC_069400.1	0
Chromosome 3	CM049197.1	=	NC_069401.1	0
Chromosome 4	CM049198.1	=	NC_069402.1	0
Chromosome 5	CM049199.1	=	NC_069403.1	0
Chromosome 6	CM049200.1	=	NC_069404.1	0
Chromosome 7	CM049201.1	=	NC_069405.1	0
Chromosome 8	CM049202.1	=	NC_069406.1	0
Chromosome 9	CM049203.1	=	NC_069407.1	0
Chromosome 10	CM049204.1	=	NC_069408.1	0
Chromosome 11	CM049205.1	=	NC_069409.1	0
Chromosome 12	CM049206.1	=	NC_069410.1	0
Chromosome 13	CM049207.1	=	NC_069411.1	0
Chromosome 14	CM049208.1	=	NC_069412.1	0
Chromosome 15	CM049209.1	=	NC_069413.1	0
Chromosome 16	CM049210.1	=	NC_069414.1	0
Chromosome 17	CM049211.1	=	NC_069415.1	0
Chromosome 18	CM049212.1	=	NC_069416.1	0
Chromosome 19	CM049213.1	=	NC_069417.1	0
Chromosome 20	CM049214.1	=	NC_069418.1	0
Chromosome 21	CM049215.1	=	NC_069419.1	0
Chromosome 22	CM049216.1	=	NC_069420.1	0
Chromosome 23	CM049217.1	=	NC_069421.1	0
Chromosome 24	CM049218.1	=	NC_069422.1	0
Chromosome 25	CM049219.1	=	NC_069423.1	0
Chromosome 26	CM049220.1	=	NC_069424.1	0
Chromosome 27	CM049221.1	=	NC_069425.1	0
Chromosome 28	CM049222.1	=	NC_069426.1	0
Chromosome 29	CM049223.1	=	NC_069427.1	0
Chromosome 30	CM049224.1	=	NC_069428.1	0
Chromosome 31	CM049225.1	=	NC_069429.1	0
Chromosome 32	CM049226.1	=	NC_069430.1	0
Chromosome 33	CM049227.1	=	NC_069431.1	0
Chromosome 34	CM049228.1	=	NC_069432.1	0
Chromosome 35	CM049229.1	=	NC_069433.1	0
Chromosome 36	CM049230.1	=	NC_069434.1	0
Chromosome 37	CM049231.1	=	NC_069435.1	0
Chromosome 38	CM049232.1	=	NC_069436.1	0
Chromosome 39	CM049233.1	=	NC_069437.1	0
Chromosome 40	CM049234.1	=	NC_069438.1	0
Chromosome 41	CM049235.1	=	NC_069439.1	0
Chromosome 42	CM049236.1	=	NC_069440.1	0
Chromosome 43	CM049237.1	=	NC_069441.1	0
Chromosome 44	CM049238.1	=	NC_069442.1	0
Chromosome 45	CM049239.1	=	NC_069443.1	0
Chromosome 46	CM049240.1	=	NC_069444.1	0
Chromosome 47	CM049241.1	=	NC_069445.1	0
Chromosome 48	CM049242.1	=	NC_069446.1	0
Chromosome 49	CM049243.1	=	NC_069447.1	0
Chromosome 50	CM049244.1	=	NC_069448.1	0
Chromosome 51	CM049245.1	=	NC_069449.1	0
Chromosome 52	CM049246.1	=	NC_069450.1	0
Chromosome 53	CM049247.1	=	NC_069451.1	0
Chromosome 54	CM049248.1	=	NC_069452.1	0
Chromosome 55	CM049249.1	=	NC_069453.1	0
Chromosome 56	CM049250.1	=	NC_069454.1	0
Chromosome 57	CM049251.1	=	NC_069455.1	0
Chromosome 58	CM049252.1	=	NC_069456.1	0
Chromosome 59	CM049253.1	=	NC_069457.1	0
Chromosome 60	CM049254.1	=	NC_069458.1	0
Chromosome 61	CM049255.1	=	NC_069459.1	0
Chromosome 62	CM049256.1	=	NC_069460.1	0
Chromosome 63	CM049257.1	=	NC_069461.1	0
Chromosome 64	CM049258.1	=	NC_069462.1	0
Chromosome 65	CM049259.1	=	NC_069463.1	0
Chromosome 66	CM049260.1	=	NC_069464.1	0
Chromosome 67	CM049261.1	=	NC_069465.1	0
Chromosome 68	CM049262.1	=	NC_069466.1	0
Chromosome 69	CM049263.1	=	NC_069467.1	0
Chromosome 70	CM049264.1	=	NC_069468.1	0
Chromosome 71	CM049265.1	=	NC_069469.1	0
Chromosome 72	CM049266.1	=	NC_069470.1	0
Chromosome 73	CM049267.1	=	NC_069471.1	0
Chromosome 74	CM049268.1	=	NC_069472.1	0
Chromosome 75	CM049269.1	=	NC_069473.1	0
Chromosome 76	CM049270.1	=	NC_069474.1	0
Chromosome 77	CM049271.1	=	NC_069475.1	0
Chromosome 78	CM049272.1	=	NC_069476.1	0
Chromosome 79	CM049273.1	=	NC_069477.1	0
Chromosome 80	CM049274.1	=	NC_069478.1	0
Chromosome 81	CM049275.1	=	NC_069479.1	0
Chromosome 82	CM049276.1	=	NC_069480.1	0
Chromosome 83	CM049277.1	=	NC_069481.1	0
Chromosome 84	CM049278.1	=	NC_069482.1	0
Chromosome 85	CM049279.1	=	NC_069483.1	0
Chromosome 86	CM049280.1	=	NC_069484.1	0
Chromosome 87	CM049281.1	=	NC_069485.1	0
Chromosome 88	CM049282.1	=	NC_069486.1	0
Chromosome 89	CM049283.1	=	NC_069487.1	0
Chromosome 90	CM049284.1	=	NC_069488.1	0
Chromosome 91	CM049285.1	=	NC_069489.1	0
Chromosome 92	CM049286.1	=	NC_069490.1	0
Chromosome 93	CM049287.1	=	NC_069491.1	0
Chromosome 94	CM049288.1	=	NC_069492.1	0
Chromosome 95	CM049289.1	=	NC_069493.1	0
Chromosome 96	CM049290.1	=	NC_069494.1	0
Chromosome 97	CM049291.1	=	NC_069495.1	0
Chromosome 98	CM049292.1	=	NC_069496.1	0
Chromosome 99	CM049293.1	=	NC_069497.1	0
Chromosome 100	CM049294.1	=	NC_069498.1	0
unplaced	n/a	n/a	n/a	46,452

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	5,247,605,071	46,552	5,221,069,959	45,061,517	53,073
Chromosome 1	142,949,047	1	142,096,547	142,949,047	1,705
Chromosome 2	132,683,543	1	131,918,543	132,683,543	1,530
Chromosome 3	116,934,865	1	116,194,365	116,934,865	1,481
Chromosome 4	113,186,082	1	112,629,082	113,186,082	1,114
Chromosome 5	113,256,706	1	112,578,706	113,256,706	1,356
Chromosome 6	106,814,695	1	106,129,195	106,814,695	1,371
Chromosome 7	99,615,393	1	99,051,807	99,615,393	1,129
Chromosome 8	89,689,027	1	89,260,027	89,689,027	858
Chromosome 9	87,686,776	1	87,215,776	87,686,776	942
Chromosome 10	87,392,546	1	86,772,046	87,392,546	1,241
Chromosome 11	78,361,451	1	77,976,451	78,361,451	770
Chromosome 12	77,386,932	1	76,914,432	77,386,932	945
Chromosome 13	74,651,552	1	74,268,052	74,651,552	767
Chromosome 14	74,449,604	1	74,127,604	74,449,604	644
Chromosome 15	71,509,238	1	71,121,238	71,509,238	776
Chromosome 16	71,045,516	1	70,694,516	71,045,516	702
Chromosome 17	70,847,130	1	70,436,630	70,847,130	821
Chromosome 18	68,244,828	1	67,858,828	68,244,828	772
Chromosome 19	64,574,666	1	64,294,666	64,574,666	560
Chromosome 20	60,327,206	1	60,025,206	60,327,206	604
Chromosome 21	59,657,907	1	59,378,907	59,657,907	558
Chromosome 22	59,299,090	1	59,029,090	59,299,090	540
Chromosome 23	59,087,076	1	58,805,076	59,087,076	564
Chromosome 24	52,476,258	1	52,240,758	52,476,258	471
Chromosome 25	52,418,708	1	52,119,708	52,418,708	598
Chromosome 26	50,987,147	1	50,713,647	50,987,147	547
Chromosome 27	50,911,439	1	50,643,439	50,911,439	536
Chromosome 28	50,666,775	1	50,405,275	50,666,775	523
Chromosome 29	50,230,587	1	49,955,587	50,230,587	550
Chromosome 30	49,462,227	1	49,221,227	49,462,227	482
Chromosome 31	48,884,978	1	48,452,478	48,884,978	865
Chromosome 32	48,508,739	1	48,220,739	48,508,739	576
Chromosome 33	46,125,467	1	45,822,967	46,125,467	605
Chromosome 34	45,740,544	1	45,529,544	45,740,544	422
Chromosome 35	45,600,167	1	45,370,167	45,600,167	460
Chromosome 36	45,256,275	1	45,086,775	45,256,275	339
Chromosome 37	45,061,517	1	44,824,517	45,061,517	474
Chromosome 38	44,214,542	1	43,988,042	44,214,542	453
Chromosome 39	43,435,958	1	43,259,958	43,435,958	352
Chromosome 40	42,728,638	1	42,478,638	42,728,638	500
Chromosome 41	42,196,477	1	41,910,977	42,196,477	571
Chromosome 42	41,956,719	1	41,739,719	41,956,719	434
Chromosome 43	41,865,233	1	41,630,233	41,865,233	470
Chromosome 44	41,663,554	1	41,446,554	41,663,554	434
Chromosome 45	40,861,055	1	40,672,055	40,861,055	378
Chromosome 46	40,418,686	1	40,205,686	40,418,686	426
Chromosome 47	39,745,675	1	39,549,175	39,745,675	393
Chromosome 48	39,748,171	1	39,534,671	39,748,171	427
Chromosome 49	38,637,708	1	38,446,208	38,637,708	383
Chromosome 50	38,569,588	1	38,366,588	38,569,588	406
Chromosome 51	38,207,155	1	38,014,155	38,207,155	386
Chromosome 52	37,615,761	1	37,421,761	37,615,761	388
Chromosome 53	37,630,315	1	37,412,815	37,630,315	435
Chromosome 54	37,648,981	1	37,327,481	37,648,981	643
Chromosome 55	36,370,656	1	36,220,656	36,370,656	300
Chromosome 56	36,160,939	1	35,982,939	36,160,939	356
Chromosome 57	35,546,502	1	35,356,002	35,546,502	381
Chromosome 58	35,549,958	1	35,349,458	35,549,958	401
Chromosome 59	35,067,005	1	34,757,005	35,067,005	620
Chromosome 60	34,947,312	1	34,692,312	34,947,312	510
Chromosome 61	34,827,483	1	34,663,983	34,827,483	327
Chromosome 62	33,899,955	1	33,747,455	33,899,955	305
Chromosome 63	33,673,000	1	33,522,500	33,673,000	301
Chromosome 64	33,252,750	1	33,095,250	33,252,750	315
Chromosome 65	32,863,844	1	32,675,344	32,863,844	377
Chromosome 66	32,333,128	1	32,109,128	32,333,128	448
Chromosome 67	31,990,470	1	31,832,970	31,990,470	315
Chromosome 68	31,903,288	1	31,717,788	31,903,288	371
Chromosome 69	31,858,498	1	31,706,998	31,858,498	303
Chromosome 70	30,881,611	1	30,723,111	30,881,611	317
Chromosome 71	30,722,648	1	30,605,648	30,722,648	234
Chromosome 72	30,874,960	1	30,590,460	30,874,960	569
Chromosome 73	30,729,222	1	30,470,722	30,729,222	517
Chromosome 74	30,614,505	1	30,435,505	30,614,505	358
Chromosome 75	30,141,103	1	29,980,603	30,141,103	321
Chromosome 76	30,081,197	1	29,934,197	30,081,197	294
Chromosome 77	30,170,993	1	29,925,493	30,170,993	491
Chromosome 78	30,052,949	1	29,860,449	30,052,949	385
Chromosome 79	29,816,050	1	29,647,050	29,816,050	338
Chromosome 80	29,641,722	1	29,489,722	29,641,722	304
Chromosome 81	28,872,412	1	28,750,912	28,872,412	243
Chromosome 82	28,170,810	1	27,899,310	28,170,810	543
Chromosome 83	27,619,271	1	27,455,271	27,619,271	328
Chromosome 84	27,432,344	1	27,301,844	27,432,344	261
Chromosome 85	27,076,919	1	26,919,419	27,076,919	315
Chromosome 86	26,402,419	1	26,254,919	26,402,419	295
Chromosome 87	26,270,035	1	26,062,035	26,270,035	416
Chromosome 88	26,163,968	1	25,965,968	26,163,968	396
Chromosome 89	25,984,450	1	25,856,424	25,984,450	257
Chromosome 90	25,569,382	1	25,425,882	25,569,382	287
Chromosome 91	24,743,527	1	24,552,527	24,743,527	382
Chromosome 92	24,458,011	1	24,356,511	24,458,011	203
Chromosome 93	24,316,755	1	24,192,755	24,316,755	248
Chromosome 94	24,381,195	1	24,181,695	24,381,195	399
Chromosome 95	22,620,991	1	22,436,491	22,620,991	369
Chromosome 96	21,469,115	1	21,294,615	21,469,115	349
Chromosome 97	19,375,509	1	19,286,009	19,375,509	179
Chromosome 98	19,253,805	1	19,128,805	19,253,805	250
Chromosome 99	18,801,782	1	18,572,782	18,801,782	458
Chromosome 100	18,541,734	1	18,311,734	18,541,734	460
unplaced	566,982,969	46,452	566,982,969	13,258	0

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ASM2687515v2

See Genome Information for Cherax quadricarinatus

Pathogen Detection Resources

There are 3 assemblies for this organism

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Assembly Unit Name
Primary Assembly
non-nuclear