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mNycCou1.pri

Organism name:
Nycticebus coucang (slow loris)
Isolate:
mNycCou1
Sex:
male
BioSample:
SAMN28408555
BioProject:
PRJNA838348
Submitter:
Vertebrate Genomes Project
Date:
2022/12/28
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027406575.1 (latest)
RefSeq assembly accession:
GCF_027406575.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAPZEE01
Assembly method:
HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1; salsa v. 2.2; gEval manual curation v. 2022-04-01; VGP pipeline v. 2.0
Expected final version:
no
Genome coverage:
31.63x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
Linked assembly:
GCA_027406535.1 (alternate pseudohaplotype of diploid)

IDs: 15197981 [UID] 39156468 [GenBank] 39893818 [RefSeq]

See Genome Information for Nycticebus coucang

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,917,154,053
Total ungapped length2,913,034,547
Gaps between scaffolds0
Number of scaffolds84
Scaffold N50135,917,784
Scaffold L5010
Number of contigs302
Contig N5041,197,715
Contig L5023
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)84

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027406605.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050137.1=NC_069780.10
Chromosome 2CM050138.1=NC_069781.10
Chromosome 3CM050139.1=NC_069782.10
Chromosome 4CM050140.1=NC_069783.10
Chromosome 5CM050141.1=NC_069784.10
Chromosome 6CM050142.1=NC_069785.10
Chromosome 7CM050143.1=NC_069786.10
Chromosome 8CM050144.1=NC_069787.10
Chromosome 9CM050145.1=NC_069788.10
Chromosome 10CM050146.1=NC_069789.10
Chromosome 11CM050147.1=NC_069790.10
Chromosome 12CM050148.1=NC_069791.10
Chromosome 13CM050149.1=NC_069792.10
Chromosome 14CM050150.1=NC_069793.10
Chromosome 15CM050151.1=NC_069794.10
Chromosome 16CM050152.1=NC_069795.10
Chromosome 17CM050153.1=NC_069796.10
Chromosome 18CM050154.1=NC_069797.10
Chromosome 19CM050155.1=NC_069798.10
Chromosome 20CM050156.1=NC_069799.10
Chromosome 21CM050157.1=NC_069800.10
Chromosome 22CM050158.1=NC_069801.10
Chromosome 23CM050159.1=NC_069802.10
Chromosome 24CM050160.1=NC_069803.10
Chromosome XCM050161.1=NC_069804.10
Chromosome YCM050162.1=NC_069805.10
unplacedn/an/an/a58

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,917,154,053842,913,034,547135,917,7842180
Chromosome 1196,249,1321196,248,146196,249,13220
Chromosome 2184,820,7951184,819,032184,820,79560
Chromosome 3161,203,7171161,199,697161,203,71730
Chromosome 4148,538,7591148,525,421148,538,759160
Chromosome 5142,425,4051142,362,410142,425,40530
Chromosome 6138,330,5751138,319,229138,330,575150
Chromosome 7137,715,3121137,665,190137,715,31250
Chromosome 8136,588,0191136,522,791136,588,019240
Chromosome 9135,917,7841135,735,237135,917,78440
Chromosome 10133,885,7511133,481,505133,885,75190
Chromosome 11128,238,8411128,234,785128,238,84130
Chromosome 12112,708,7201112,707,655112,708,72030
Chromosome 13103,192,6191103,191,814103,192,61950
Chromosome 1499,988,313199,954,34099,988,31320
Chromosome 1597,885,895197,874,41997,885,89540
Chromosome 1696,499,272196,495,36396,499,27210
Chromosome 1791,048,355191,048,34291,048,35510
Chromosome 1880,579,731180,444,50280,579,731130
Chromosome 1972,490,086172,379,19572,490,08640
Chromosome 2069,287,667169,282,00669,287,66740
Chromosome 2167,625,389167,622,15967,625,389180
Chromosome 2261,455,708161,443,23561,455,70840
Chromosome 2338,949,463138,946,33538,949,46320
Chromosome 2433,060,932133,060,93233,060,93200
Chromosome X187,328,5191185,241,191187,328,519240
Chromosome Y35,646,755134,771,32535,646,755220
unplaced25,492,5395825,458,2911,091,657210