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Source database (GenBank or RefSeq) File type

RoL_Sspl_1.0

Organism name:

Synchiropus splendidus (mandarinfish)

Isolate:

RoL2022-P1

Sex:

male

BioSample:

SAMN31865018

BioProject:

PRJNA851781

Submitter:

University of Idaho at Moscow

Date:

2023/01/13

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_027744825.1 (latest)

RefSeq assembly accession:

GCF_027744825.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAPTFM01

Assembly method:

Hifiasm v. 0.16.1

Expected final version:

Genome coverage:

100.0x

Sequencing technology:

Pacbio HiFi; Phase Genomics Hi-C

IDs: 15366581 [UID] 39551038 [GenBank] 40976578 [RefSeq]

See Genome Information for Synchiropus splendidus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027744825.1	≠	GCF_027744825.2	RoL_Sspl_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	582,898,256
Total ungapped length	582,897,896
Gaps between scaffolds	0
Number of scaffolds	97
Scaffold N50	26,259,131
Scaffold L50	8
Number of contigs	115
Contig N50	26,259,131
Contig L50	8
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	97

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM050959.1	=	NC_071334.1	0
Chromosome 2	CM050960.1	=	NC_071335.1	0
Chromosome 3	CM050961.1	=	NC_071336.1	0
Chromosome 4	CM050962.1	=	NC_071337.1	0
Chromosome 5	CM050963.1	=	NC_071338.1	0
Chromosome 6	CM050964.1	=	NC_071339.1	0
Chromosome 7	CM050965.1	=	NC_071340.1	0
Chromosome 8	CM050966.1	=	NC_071341.1	0
Chromosome 9	CM050967.1	=	NC_071342.1	0
Chromosome 10	CM050968.1	=	NC_071343.1	0
Chromosome 11	CM050969.1	=	NC_071344.1	0
Chromosome 12	CM050970.1	=	NC_071345.1	0
Chromosome 13	CM050971.1	=	NC_071346.1	0
Chromosome 14	CM050972.1	=	NC_071347.1	0
Chromosome 15	CM050973.1	=	NC_071348.1	0
Chromosome 16	CM050974.1	=	NC_071349.1	0
Chromosome 17	CM050975.1	=	NC_071350.1	0
Chromosome 18	CM050976.1	=	NC_071351.1	0
Chromosome 19	CM050977.1	=	NC_071352.1	0
unplaced	n/a	n/a	n/a	77

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	582,881,826	96	582,881,466	26,259,131	18
Chromosome 1	71,620,908	1	71,620,788	71,620,908	6
Chromosome 2	43,131,703	1	43,131,703	43,131,703	0
Chromosome 3	36,562,627	1	36,562,607	36,562,627	1
Chromosome 4	36,510,946	1	36,510,926	36,510,946	1
Chromosome 5	34,533,849	1	34,533,809	34,533,849	2
Chromosome 6	28,855,288	1	28,855,268	28,855,288	1
Chromosome 7	28,272,796	1	28,272,796	28,272,796	0
Chromosome 8	26,259,131	1	26,259,131	26,259,131	0
Chromosome 9	25,760,230	1	25,760,210	25,760,230	1
Chromosome 10	25,476,212	1	25,476,192	25,476,212	1
Chromosome 11	25,349,683	1	25,349,683	25,349,683	0
Chromosome 12	25,151,072	1	25,151,072	25,151,072	0
Chromosome 13	24,719,204	1	24,719,204	24,719,204	0
Chromosome 14	24,363,038	1	24,362,958	24,363,038	4
Chromosome 15	22,584,201	1	22,584,181	22,584,201	1
Chromosome 16	21,100,824	1	21,100,824	21,100,824	0
Chromosome 17	20,772,013	1	20,772,013	20,772,013	0
Chromosome 18	19,086,417	1	19,086,417	19,086,417	0
Chromosome 19	18,015,142	1	18,015,142	18,015,142	0
unplaced	24,756,542	77	24,756,542	687,552	0

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RoL_Sspl_1.0

See Genome Information for Synchiropus splendidus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear