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rMalTer1.hap1

Organism name:
Malaclemys terrapin pileata (diamondback terrapin)
Isolate:
rMalTer1
Sex:
male
BioSample:
SAMN31394215
BioProject:
PRJNA895896
Submitter:
Vertebrate Genomes Project
Date:
2023/01/18
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027887155.1 (latest)
RefSeq assembly accession:
GCF_027887155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQIHI01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7; salsa v. 2.3 + galaxy2; gEVAL manual curtion v. 2022-07-08
Expected final version:
no
Genome coverage:
30.26x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2

IDs: 15455951 [UID] 39762428 [GenBank] 41130848 [RefSeq]

See Genome Information for Malaclemys terrapin

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,211,221,380
Total ungapped length2,209,471,813
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50144,565,223
Scaffold L505
Number of contigs217
Contig N5075,591,180
Contig L5011
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)76

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027887195.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM051158.1=NC_071505.10
Chromosome 2CM051159.1=NC_071506.10
Chromosome 3CM051160.1=NC_071507.10
Chromosome 4CM051161.1=NC_071508.10
Chromosome 5CM051162.1=NC_071509.10
Chromosome 6CM051163.1=NC_071510.10
Chromosome 7CM051164.1=NC_071511.11
Chromosome 8CM051165.1=NC_071512.10
Chromosome 9CM051166.1=NC_071513.10
Chromosome 10CM051167.1=NC_071514.10
Chromosome 11CM051168.1=NC_071515.10
Chromosome 12CM051169.1=NC_071516.10
Chromosome 13CM051170.1=NC_071517.10
Chromosome 14CM051171.1=NC_071518.10
Chromosome 15CM051172.1=NC_071519.10
Chromosome 16CM051173.1=NC_071520.10
Chromosome 17CM051174.1=NC_071521.10
Chromosome 18CM051175.1=NC_071522.10
Chromosome 19CM051176.1=NC_071523.10
Chromosome 20CM051177.1=NC_071524.17
Chromosome 21CM051178.1=NC_071525.10
Chromosome 22CM051179.1=NC_071526.10
Chromosome 23CM051180.1=NC_071527.10
Chromosome 24CM051181.1=NC_071528.10
Chromosome 25CM051182.1=NC_071529.10
unplacedn/an/an/a43

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,211,221,380762,209,471,813144,565,2231410
Chromosome 1Assembled molecule356,035,8931356,032,593356,035,89390
Chromosome 2Assembled molecule287,939,1291287,917,407287,939,12970
Chromosome 3Assembled molecule209,484,7001209,346,198209,484,700100
Chromosome 4Assembled molecule154,637,6761154,635,276154,637,67660
Chromosome 5Assembled molecule144,565,2231144,563,510144,565,22380
Chromosome 6Assembled molecule134,400,8591134,385,304134,400,85940
Chromosome 7AllAssembled moleculeUnlocalized scaffolds128,650,396128,564,33986,057211128,650,383128,564,32686,057128,564,339128,564,33986,057110000
Chromosome 8Assembled molecule110,734,7121110,734,499110,734,71220
Chromosome 9Assembled molecule106,342,4161106,342,416106,342,41600
Chromosome 10Assembled molecule87,964,153187,962,86487,964,15320
Chromosome 11Assembled molecule80,279,977180,275,36780,279,97720
Chromosome 12Assembled molecule50,359,489150,351,44250,359,48970
Chromosome 13Assembled molecule46,690,620146,689,42046,690,62030
Chromosome 14Assembled molecule44,538,819144,538,80644,538,81910
Chromosome 15Assembled molecule35,236,932133,984,05035,236,932390
Chromosome 16Assembled molecule33,587,576133,587,07633,587,57610
Chromosome 17Assembled molecule27,359,296127,345,94727,359,29610
Chromosome 18Assembled molecule26,203,773126,197,51626,203,77320
Chromosome 19Assembled molecule23,482,147123,482,14723,482,14700
Chromosome 20AllAssembled moleculeUnlocalized scaffolds22,428,43019,375,1353,053,29581722,406,65319,354,8583,051,79519,375,13519,375,1351,797,18213103000
Chromosome 21Assembled molecule21,628,354121,383,05321,628,35480
Chromosome 22Assembled molecule20,494,329120,493,32920,494,32920
Chromosome 23Assembled molecule20,003,749119,998,94920,003,74960
Chromosome 24Assembled molecule17,851,537117,847,81317,851,53730
Chromosome 25Assembled molecule17,025,087117,024,68717,025,08720
unplacedAssembled molecule3,296,108433,295,108111,64420