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Source database (GenBank or RefSeq) File type

ASM2792580v1

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: PV0838
BioSample:: SAMD00562888
BioProject:: PRJDB14896
Submitter:: Kyushu University
Date:: 2023/01/13
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_027925805.1 (latest)
RefSeq assembly accession:: GCF_027925805.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Flye v. 2.9
Genome coverage:: 244x
Sequencing technology:: MinION

IDs: 15483281 [UID] 39812968 [GenBank] 42574808 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266204 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027925805.1	=	GCF_027925805.1	ASM2792580v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated by DFAST v.1.2.18 (https://dfast.nig.ac.jp)

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::05/11/2023 07:34:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,015
CDSs (total)::5,876
Genes (coding)::5,549
CDSs (with protein)::5,549
Genes (RNA)::139
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::106
ncRNAs::11
Pseudo Genes (total)::327
CDSs (without protein)::327
Pseudo Genes (ambiguous residues)::0 of 327
Pseudo Genes (frameshifted)::116 of 327
Pseudo Genes (incomplete)::205 of 327
Pseudo Genes (internal stop)::74 of 327
Pseudo Genes (multiple problems)::61 of 327
Pseudo Genes (short protein)::3 of 327
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,847,772
Total ungapped length	5,847,772
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP027188.1	=	NZ_AP027188.1
Plasmid pO26_PV0838_1	AP027189.1	=	NZ_AP027189.1
Plasmid pO26_PV0838_2	AP027190.1	=	NZ_AP027190.1

Molecule	Total Length
All	5,847,772
Chromosome	5,770,126
Plasmid pO26_PV0838_1	70,980
Plasmid pO26_PV0838_2	6,666

	ANI	Query coverage	Subject coverage
Declared type	98.92	77.48	85.99
Best-match type	98.92	77.48	85.99

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ASM2792580v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266204 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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