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NHGRI_mPonAbe1-v2.0_pri

Organism name:
Pongo abelii (Sumatran orangutan)
Isolate:
AG06213
Sex:
male
BioSample:
SAMN10521808
BioProject:
PRJNA916743
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/05
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028885655.2 (latest)
RefSeq assembly accession:
GCF_028885655.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQQLQ02
Assembly method:
Verkko v. 1.4
Expected final version:
no
Genome coverage:
89.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION
Linked assembly:
GCA_028885685.2 (alternate pseudohaplotype of diploid)

IDs: 20607951 [UID] 52037358 [GenBank] 53518818 [RefSeq]

See Genome Information for Pongo abelii

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

The mitochondrial genome was added to the assembly on May 2024.

Global statistics

Number of regions with alternate loci or patches2
Total sequence length3,259,870,029
Total ungapped length3,251,808,773
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50146,197,178
Scaffold L509
Number of contigs41
Contig N50146,197,178
Contig L509
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)30

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear

Regions

NameLocation
PAR1X:1-2382235
PAR1Y:1-2426996
Assembly Unit: Primary Assembly (GCF_028885665.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM054679.2=NC_071985.20
Chromosome 2CM068843.1=NC_085928.10
Chromosome 3CM054682.2=NC_071988.20
Chromosome 4CM054683.2=NC_071989.20
Chromosome 5CM054684.2=NC_071990.20
Chromosome 6CM054685.2=NC_071991.20
Chromosome 7CM054686.2=NC_071992.20
Chromosome 8CM054687.2=NC_071993.20
Chromosome 9CM054688.2=NC_071994.20
Chromosome 10CM054689.2=NC_071995.20
Chromosome 11CM054690.2=NC_071996.20
Chromosome 12CM054691.2=NC_071997.20
Chromosome 13CM054692.2=NC_071998.20
Chromosome 14CM054693.2=NC_071999.20
Chromosome 15CM054694.2=NC_072000.20
Chromosome 16CM054695.2=NC_072001.20
Chromosome 17CM054696.2=NC_072002.20
Chromosome 18CM054697.2=NC_072003.24
Chromosome 19CM054698.2=NC_072004.20
Chromosome 20CM054699.2=NC_072005.20
Chromosome 21CM054700.2=NC_072006.20
Chromosome 22CM054701.2=NC_072007.20
Chromosome 23CM068844.1=NC_085929.10
Chromosome XCM054702.2=NC_072008.20
Chromosome YCM054703.2=NC_072009.20

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,259,853,530293,251,792,274146,197,178110
Chromosome 1Assembled molecule233,795,5191233,785,519233,795,51910
Chromosome 2Assembled molecule209,544,9871209,544,987209,544,98700
Chromosome 3Assembled molecule212,916,7751212,916,775212,916,77500
Chromosome 4Assembled molecule190,378,9041190,378,904190,378,90400
Chromosome 5Assembled molecule172,605,3631172,605,363172,605,36300
Chromosome 6Assembled molecule156,966,9911156,966,991156,966,99100
Chromosome 7Assembled molecule161,631,3961161,631,396161,631,39600
Chromosome 8Assembled molecule140,854,1351140,854,135140,854,13500
Chromosome 9Assembled molecule138,471,0211138,471,021138,471,02100
Chromosome 10Assembled molecule132,281,7171132,281,717132,281,71700
Chromosome 11Assembled molecule146,197,1781146,197,178146,197,17800
Chromosome 12Assembled molecule133,183,1241132,183,124133,183,12410
Chromosome 13Assembled molecule129,618,1701128,618,170129,618,17010
Chromosome 14Assembled molecule120,579,8481119,574,848120,579,84820
Chromosome 15Assembled molecule111,741,6591110,741,659111,741,65910
Chromosome 16Assembled molecule105,333,8451104,333,845105,333,84510
Chromosome 17Assembled molecule95,460,129194,460,12995,460,12910
Chromosome 18AllAssembled moleculeUnlocalized scaffolds90,322,49589,553,113769,38251490,276,23989,506,857769,38289,553,11389,553,113221,508110000
Chromosome 19Assembled molecule98,669,288198,669,28898,669,28800
Chromosome 20Assembled molecule65,400,147165,400,14765,400,14700
Chromosome 21Assembled molecule68,750,668168,750,66868,750,66800
Chromosome 22Assembled molecule57,143,103156,143,10357,143,10310
Chromosome 23Assembled molecule57,593,421156,593,42157,593,42110
Chromosome XAssembled molecule162,586,3211162,586,321162,586,32100
Chromosome YAssembled molecule67,827,326167,827,32667,827,32600
MoleculeTotal
Length
Mitochondrion MT16,499
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps