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ASM2921116v1

Organism name:
Roseisolibacter sp. H3M3-2 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: H3M3-2
BioSample:
SAMN33482419
BioProject:
PRJNA939560
Submitter:
Chinese Academy of Sciences
Date:
2023/03/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_029211165.1 (latest)
RefSeq assembly accession:
GCF_029211165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARGEK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 16178781 [UID] 41475698 [GenBank] 41509658 [RefSeq]

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/09/2023 10:03:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,320
CDSs (total)::5,266
Genes (coding)::5,251
CDSs (with protein)::5,251
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::3 of 15
Pseudo Genes (incomplete)::14 of 15
Pseudo Genes (internal stop)::1 of 15
Pseudo Genes (multiple problems)::2 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,366,292
Total ungapped length5,365,708
Gaps between scaffolds0
Number of scaffolds818
Scaffold N5011,520
Scaffold L50134
Number of contigs824
Contig N5011,350
Contig L50136
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)818

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,366,2928185,365,70811,52060

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Roseisolibacter sp. H3M3-2Roseisolibacter sp. H3M3-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030159095.1Roseisolibacter agritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9245.9141.55

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna