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fLamInc1.hap2

Organism name:
Lampris incognitus (smalleye Pacific opah)
Isolate:
fLamInc1
Sex:
male
BioSample:
SAMN34060140
BioProject:
PRJNA951788
Submitter:
Vertebrate Genomes Project
Date:
2023/04/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_029633865.1 (latest)
RefSeq assembly accession:
GCF_029633865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARULE01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy4; yahs v. 1.2a.2 + galaxy
Expected final version:
no
Genome coverage:
32.0x
Sequencing technology:
PacBio Sequel II HiFi; Arima Hi-C v2

IDs: 16425561 [UID] 42092668 [GenBank] 42778098 [RefSeq]

See Genome Information for Lampris incognitus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,482,357,630
Total ungapped length1,481,734,900
Gaps between scaffolds0
Number of scaffolds544
Scaffold N5062,607,046
Scaffold L508
Number of contigs3,659
Contig N50917,127
Contig L50379
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)544

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029634705.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM056224.1=NC_079211.10
Chromosome 2CM056225.1=NC_079212.10
Chromosome 3CM056226.1=NC_079213.11
Chromosome 4CM056227.1=NC_079214.10
Chromosome 5CM056228.1=NC_079215.12
Chromosome 6CM056229.1=NC_079216.10
Chromosome 7CM056230.1=NC_079217.10
Chromosome 8CM056231.1=NC_079218.10
Chromosome 9CM056232.1=NC_079219.10
Chromosome 10CM056233.1=NC_079220.10
Chromosome 11CM056234.1=NC_079221.10
Chromosome 12CM056235.1=NC_079222.10
Chromosome 13CM056236.1=NC_079223.10
Chromosome 14CM056237.1=NC_079224.10
Chromosome 15CM056238.1=NC_079225.12
Chromosome 16CM056239.1=NC_079226.10
Chromosome 17CM056240.1=NC_079227.11
Chromosome 18CM056241.1=NC_079228.10
Chromosome 19CM056242.1=NC_079229.10
Chromosome 20CM056243.1=NC_079230.10
Chromosome 21CM056244.1=NC_079231.10
unplacedn/an/an/a517

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,482,357,6305441,481,734,90062,607,0463,1150
Chromosome 1Assembled molecule155,004,9711154,954,171155,004,9712540
Chromosome 2Assembled molecule152,470,1171152,421,117152,470,1172450
Chromosome 3AllAssembled moleculeUnlocalized scaffolds118,929,702118,132,594797,108211118,878,502118,081,994796,508118,132,594118,132,594797,1082562533000
Chromosome 4Assembled molecule75,567,356175,543,95675,567,3561170
Chromosome 5AllAssembled moleculeUnlocalized scaffolds71,420,50670,610,339810,16731271,393,50670,583,539809,96770,610,33970,610,339498,5441351341000
Chromosome 6Assembled molecule69,759,713169,735,27669,759,7131230
Chromosome 7Assembled molecule69,029,564169,005,76469,029,5641190
Chromosome 8Assembled molecule62,607,046162,587,44662,607,046980
Chromosome 9Assembled molecule62,410,958162,382,95862,410,9581400
Chromosome 10Assembled molecule60,220,590160,192,56160,220,5901400
Chromosome 11Assembled molecule60,086,142160,060,34260,086,1421290
Chromosome 12Assembled molecule57,010,017156,978,17957,010,0171600
Chromosome 13Assembled molecule54,962,777154,936,77754,962,7771300
Chromosome 14Assembled molecule51,790,303151,765,90351,790,3031220
Chromosome 15AllAssembled moleculeUnlocalized scaffolds51,303,15350,390,867912,28631251,281,55350,369,267912,28650,390,86750,390,867576,8481081080000
Chromosome 16Assembled molecule48,445,902148,415,90248,445,9021500
Chromosome 17AllAssembled moleculeUnlocalized scaffolds46,468,32245,868,399599,92321146,440,92245,840,999599,92345,868,39945,868,399599,9231371370000
Chromosome 18Assembled molecule44,154,353144,125,72744,154,3531430
Chromosome 19Assembled molecule40,302,424140,277,22440,302,4241260
Chromosome 20Assembled molecule37,585,745137,556,74537,585,7451450
Chromosome 21Assembled molecule30,094,572130,072,77230,094,5721090
unplacedAssembled molecule62,733,39751762,727,597326,040290